| u-track |
35.586 |
|
2D, 3D, time-series |
Matlab Image Processing Toolbox, Bio-Formats |
Software |
… License GPL Description u-track is a multiple-particle tracking Matlab software that is designed to (1) track dense … server Version 2.0 includes two new tracking applications: microtubule plus-end tracking (previously distributed as … track analysis, with two methods: motion analysis and microtubule plus-end classification For more information, … |
| Manual Tracking Components of ImageJ |
31.784 |
|
2D, time-series |
Fiji |
Software |
… The Fiji distribution of ImageJ comes with several manual tracking tools, two of which are particularly useful: * _Plugins->Tracking->Manual Tracking_ * _Plugins->Tracking->Manual tracking with … |
| WIS-PhagoTracker |
30.748 |
|
|
MATLAB |
Software |
… readable files. has function Image segmentation Object tracking has topic Bioimage informatics has biological terms … Naffar Abu-Amara , Benjamin Geiger … 4004 … 4023 … 4155 … Tracking … Bioimage analysis … markdown … Ofra Golani … Image segmentation … Object tracking … Bioimage informatics … WIS-PhagoTracker is a … |
| MicrotubuleTracker in FIJI |
26.733 |
|
2D, 3D, time-series |
Fiji |
Software |
… in vitro reconstitution approach, stabilized, non-dynamic microtubule seeds serve as nucleation points for dynamically … tool. The first module detects and tracks the growing microtubule ends and creates trajectories. The second module … movie (batch mode). has function Filament tracing Object tracking Trajectory analysis has topic In-vitro imaging has … |
| plusTipTracker |
25.986 |
|
2D, time-series |
Matlab Image Processing Toolbox, MATLAB, MATLAB Optimization toolbox, MATLAB Statistics toolbox, MATLAB Curve Fitting Toolbox |
Software |
… a Matlab package (plusTipTracker) for segmentation and tracking of microtubule tips, based on fluorescence time-lapse movies from microtubule tip markers such as EB-GFP. The tracking model … |
| Track Manager |
23 |
|
|
Icy, Track Processor Time Clip, Track Processor ROI Gate, Spot detection utilities, Track Processor Instant Speed, Track Processor Intensity Profile, Track Processor Color, Track Processor MSD, Track Manager, Track Processor export track to Excel, Track Processor Flow, EBImage display |
Software |
… local flow graph, polar graph. has function Object tracking has topic Fluorescence microscopy has biological … … 4936 … Fabrice de Chaumont … 4023 … 4022 … Tracking … basic_html … migration … Object tracking … Fluorescence microscopy … The track manager … |
| Simple-Tracker |
21.993 |
|
2D, 3D, time-series |
MATLAB |
Software |
… License BSD Description SIMPLETRACKER a simple particle tracking algorithm that can deal with gaps. Tracking , or particle linking, consist in re-building the … frame corresponding to a particle in the previous frame. Tracking algorithms aim at providing a solution for this … |
| Microtubule end tracking in Drosophila Oocyte |
21 |
|
2D, time-series |
Fiji, TrackMate, Bleach Correction, Fourier Bandpass Filter, Temporal Medial Filter |
Software |
… Manual License/Openness Free and open source Description Microtubule end tracking in live cell fluorescent images of Drosophila oocyte … 4023 … Tracking … basic_html … czhang … Object tracking … Microtubule end tracking in live cell fluorescent images of … |
| Bayesian Tracker (btrack) |
19 |
|
2D, time-series |
Python |
Software |
… Description btrack is a Python library for multi object tracking, used to reconstruct trajectories in crowded fields. … through cell divisions, btrack developed a Bayesian cell tracking methodology that uses input features from the images … imaging data. has function Analysis Cell segmentation Cell tracking has topic Live sample imaging Fluorescence … |
| 2D and 3D tracking based on global cost function optimization |
17.593 |
|
2D, 3D, time-series |
ImageJ, MTrackJ, ImageScience.jar, Jama, Tracking2.0 |
Software |
… some analysis results provided. No dynamic model. The tracking part is not dependent of ImageJ. Pitfalls: does not … max allowed disappearance in frame: 1 has function Object tracking Particle tracking Trajectory analysis has topic Bioimage informatics … |
| idtracker.ai |
16.913 |
|
2D, time-series |
OpenCV / CUDA, Python, PyTorch |
Software |
… animals touch or cross each other. has function Object tracking has topic Machine learning has biological terms … melanogaster ants mouse Additional keywords behavioral tracking animal tracking center of mass tracking Entry Curator lascholz Post … |
| idTracker: Tracking animals |
16.65 |
|
2D, time-series |
MATLAB |
Software |
… image: Example video of 5 zebrafish has function Object tracking has biological terms mouse Drosophila melanogaster … Publication Link Pérez-Escudero et. al. (2014) "idTracker: tracking individuals in a group by au… … migration.tool … … Gonzalo G. (orcid.org/0000-0001-5359-3426) … 4023 … Tracking … basic_html … czhang … Object tracking … idTracker … |
| Microtubule Length Analysis |
16.529 |
|
2D, 3D |
Fiji, Tubeness |
Software |
… two step workflow, allowing visual & manual correction of microtubule between the 2 steps. Batch measurement of microtubule lengths for multiple images is achieved by … then their skeletonizations. The number of pixels in the microtubule is proportional to their length, so the length … |
| The NEMO dots assembly: Single-particle tracking and analysis |
16 |
|
|
|
Software |
… source Description This workflow presents single-particle tracking in Fiji using Track-Mate, and track motility … classification Step 4. Particle-linking TrackMate Cell tracking Step 5. Filtering tracks TrackMate Trajectory … … natasa … This workflow presents single-particle tracking in Fiji using Track-Mate, and track motility … |
| iTrack4U |
15 |
|
2D, time-series |
ImageJ, jMathPlot |
Software |
… and jMathPlot libraries, which aims at automatically tracking cells recorded in phase-contrast microscopy. It includes all tools from image files preprocessing, tracking to data extraction and visualization. Please cite … using this software package! has function Isolated object tracking has topic Light microscopy Phase contrast microscopy … |
| FlyLimbTracker |
15 |
|
2D, time-series |
|
Software |
… function Active contours Interactive segmentation Object tracking Isolated object tracking has topic Microscopy Fluorescence microscopy has … … Active contour models … Snakes … Manual segmentation … Tracking … Slide scanner … basic_html … Active contours … … |
| ISBI Challenge Tracks Importer |
15 |
|
|
Icy |
Software |
… are in the .xml format used for the ISBI'2012 Particle Tracking Challenge. Tracks are loaded/exported in/from the TrackManager plugin has function Analysis Object tracking has topic Bioimage informatics Additional keywords … Nicolas … de Chaumont, Fabrice … 4772 … 4023 … 4155 … Tracking … Bioimage analysis … basic_html … sampaio … … |
| TrackMate |
14.954 |
|
2D, 3D, multi-channel, time-series |
Fiji |
Software |
… TrackMate provides the tools to perform single particle tracking (SPT). SPT is an image analysis challenge where the … events, etc... has function Spot detection Particle tracking has topic Fluorescence microscopy has biological … … markdown … lplantard … Spot detection … Particle tracking … Fluorescence microscopy … TrackMate provides the … |
| Nuclei Tracking (TrackMate) |
14 |
|
2D, time-series |
TrackMate, pyimagej |
Software |
… particles in 2D time-lapse image. has function Particle tracking has topic Machine learning has biological terms … 20:22 Download Page Neubias BIAFLOWS workflow of Particle Tracking with TrackMate Reference Publication Link TrackMate: … An open and extensible platform for single-particle tracking DOI link BIAFLOWS-PROBLEM: … |
| Manual tracking with TrackMate |
14 |
|
2D, 3D, time-series |
Fiji |
Software |
… License/Openness Free and open source Description Manual tracking using Trackmate plugin (comes with FIji, so no … required if you are using Fiji). has function Object tracking Entry Curator kota Post date 05/27/2018 - 17:31 Last … Page GitHub Documentation Link https://imagej.net/Manual_tracking_with_TrackMate Reference Publication Link Tinevez et … |
| CellTrack |
14 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… Free and open source Description A standalone cell tracking software for single cell migration. Tracking of cells in tissue was also done in Drosophila … function Object detection Object feature extraction Cell tracking Trajectory analysis has topic Bioimage informatics … |
| Multi Kymograph |
13.743 |
|
2D, time-series |
ImageJ |
Software |
… disruption (e.g. laser surgery) has function Object tracking Trajectory analysis has topic Bioimage informatics … … 4479 … Jens Rietdorf … Arne Seitz … 4023 … 4768 … 4155 … Tracking … Bioimage analysis … basic_html … julien colombelli … Object tracking … Trajectory analysis … Bioimage informatics … This … |
| Object Tracking and Metadata Management |
13.703 |
|
2D, time-series |
CellProfiler |
Software |
… their movement. This example shows an example of object tracking. This pipeline analyzes a time-lapse experiment to … Saint V.Foe and G.Odell, . 26 July 2001 has function Cell tracking has topic Confocal microscopy has biological terms … Documentation Link http://cellprofiler.org/examples/#Tracking … migration.tool … Cellprofiler team … 4207 … 4188 … … |
| CellTracker |
13 |
|
time-series |
|
Software |
… source Description CellTracker software is a platform for tracking nuclear and cytoplasmic fluorescence intensities … series data. Requires visual C++ has function Object tracking Cell tracking has topic Live sample imaging Fluorescence … |
| MTrackJ |
13 |
|
|
ImageJ, ImageScience.jar |
Software |
… License Custom (see documentation page) Description Manual Tracking GUI. Many shortcut keys, and after being experienced, manual tracking can efficiently done. Post-editing capability to … and splitting tracks is quite useful. has function Object tracking Entry Curator kota Post date 12/21/2014 - 02:52 Last … |
| 2D tracking using KNIME and Fiji |
13 |
|
2D, time-series |
KNIME Image Processing and Analysis, Fiji |
Software |
… first, then it uses Fiji TrackMate LAP method for the tracking task. Documentation starts from p23 of the linked … Image: mitocheck_small.tif (2.9M) has function Object tracking Entry Curator czhang Post date 12/09/2014 - 12:47 … Last modified 05/14/2018 - 23:16 Download Page Session4_Tracking Documentation Link Chapter 3 2D+time tracking … … |
| Motility analysis with mean-square displacement |
13 |
|
|
|
Software |
… Language Matlab License/Openness Commercial Description Tracking tools, such as TrackMate, produce tracks and their … to the scientific question to be addressed, and therefore tracking tools remain generic and seldom include specialized … … Herbert, Sébastien, ORCID: … basic_html … natasa … Tracking tools, such as TrackMate, produce tracks and their … |
| Particle Tracker 2D/3D |
12.962 |
|
2D, 3D, multi-channel, time-series |
Fiji, MosaicSuite |
Software |
… efficient, two- and three-dimensional, feature point-tracking tool for the automated detection and analysis of … as recorded by video imaging in cell biology. The tracking process requires no apriori mathematical modelling … vs. time - along a trajectory has function Object tracking Particle tracking has topic Live sample imaging … |
| QuimP |
12.888 |
|
2D, multi-channel, time-series |
|
Software |
… License Description Summary QuimP is software for tracking cellular shape changes and dynamic distributions of … 2D. A quantitative understanding demands segmentation and tracking of whole cells and fluorescence signals associated … manner. The most critical step however is cell edge tracking, which links points on contours at time t to … |
| ilastik |
12.785 |
|
2D, 3D, multi-channel, time-series |
VIGRA |
Software |
… classification, automated and semi-automated object tracking, semi-automated segmentation and object counting … objects (e.g. neurons) based on user-provided seeds Manual Tracking: Semi-automated cell tracking of 2D+time or 3D+time images based on manual … |
| BTrackMate |
12 |
|
|
|
Software |
… can then be loaded into the Fiji tracker to do particle tracking with TrackMate interface. Post date 01/28/2021 - … can then be loaded into the Fiji tracker to do particle tracking with TrackMate interface. … BTrackMate … |
| Microtubules Tool (3D) |
12 |
|
3D, multi-channel |
ImageJ, Fiji, Skeletonize3D, 3D Objects Counter |
Software |
|
| Tracking2.0 |
12 |
|
2D, 3D |
ImageJ, Jama |
Software |
… in 2D frames and has been applied previously to particle tracking and analysis in high-speed atomic force microscopy image series. has function Object tracking Particle tracking has topic Bioimage informatics Post date 05/24/2018 … |
| ilastik - Automatic Tracking |
12 |
|
2D, 3D, time-series |
ilastik |
Software |
… Free and open source Description Fully-automated cell tracking of 2D+time or 3D+time images with some parameter tuning has function Object tracking has topic Bioimage informatics Supervised learning … Documentation Link https://www.ilastik.org/documentation/tracking/tracking#sec_automatic Reference Publication Link … |
| Tracking of focal adhesions in 2D time lapse movies |
12 |
|
2D, time-series |
MATLAB |
Software |
… Semi-automated License/Openness I do not know Description Tracking of focal adhesions includes a number of challenges: … objects and how to track them over time. Interestingly, tracking results are fed back to segmentation to improve … script. has function Image segmentation Object tracking has topic Fluorescence microscopy has biological … |
| Segmentation and Tracking of Mammary Epithelial Organoids in Brightfield Microscopy |
11.886 |
|
2D, time-series |
ImageJ |
Software |
… pipeline for reliable single-organoid segmentation and tracking in 2D+t high-resolution brightfield microscopy of … instance-segmentation-correcting tracking step to associate the corresponding organoid … also available here . has function Cell segmentation Cell tracking Synthetic image generation has topic Live sample … |
| KymographTracker |
11 |
|
2D, time-series |
|
Software |
… and the results are visualized. has function Object tracking has topic Fluorescence microscopy Additional … Publication Link Curvelet analysis of kymograph for tracking bi-directional particles in fluores… Usage Example … … 4476 … 4615 … Nicolas Chenouard … 4023 … 4022 … Tracking … basic_html … Niko Kladt … Object tracking … … |
| Track Processor Color |
11 |
|
|
Icy, Track Manager, EBImage display |
Software |
… to color tracks in the Track Manager has function Object tracking Visualisation Entry Curator lplantard Post date … … migration.tool … Fabrice de Chaumont … 4023 … 4045 … Tracking … Plotting … basic_html … lplantard … Object tracking … Visualisation … Track Processor to color tracks in … |
| ISBI Tracking Challenge Batch Scoring |
11 |
|
|
Icy |
Software |
… Free and open source Description Dedicated to score tracking dataset from the ISBI tracking challenge has function Analysis Cell tracking has topic Bioimage informatics Statistics Additional … |
| ilastik - Manual Tracking |
11 |
|
2D, 3D, multi-channel, time-series |
ilastik |
Software |
… Free and open source Description Semi-automated cell tracking of 2D+time or 3D+time images based on manual annotations has function Object tracking has topic Bioimage informatics Entry Curator Moritz … Documentation Link https://www.ilastik.org/documentation/tracking/tracking#sec_manual Usage Example Link … |
| Icy Spot Tracking |
11 |
|
2D, 3D, time-series |
Spot Detector (Icy), Spot detection utilities, Track Manager |
Software |
… particle tracker’ plugin. has function Particle tracking Trajectory analysis has topic Bioimage informatics … Download Page http://icy.bioimageanalysis.org/plugin/spot-tracking/ Documentation Link http://icy.bioimageanalysis.org/plugin/spot-tracking/ Reference Publication Link Multiple Hypothesis … |
| Object Tracking (MU-Lux-CZ) |
11 |
|
2D, time-series |
OpenCV, scikit-image, Tensorflow, Keras |
Software |
… License/Openness Free and open source Description Cell tracking using MU-Lux-CZ algorithm. Dockerized Workflow for … by Martin Maska (Masaryk University). has function Object tracking has topic Machine learning Entry Curator lascholz … - 18:43 Download Page Neubias BIAFLOWS workflow of Object Tracking with MU-Lux Documentation Link Cell Tracking … |
| Object Tracking (Octave) |
11 |
|
2D, time-series |
GNU Octave |
Software |
… License/Openness Free and open source Description Nuclei tracking in 2D time-lapse with Octave tracker (adapted from Matlab LOBSTER version). has function Object tracking has topic Bioimage informatics Live sample imaging … - 19:41 Download Page Neubias BIAFLOWS workflow of Object Tracking with Octave Reference Publication Link LOBSTER: an … |
| Particle tracking with OMERO |
11 |
|
2D, time-series |
OMERO, OMERO.matlab |
Software |
… implementing the sophisticated multiple-particle tracking algorithm of Jaqaman et al. . It works on data … to visualise these results. has function Object tracking Entry Curator graemeball Post date 12/09/2014 - … … migration.tool … Danuser lab … 4023 … Tracking … basic_html … graemeball … Object tracking … … |
| Volocity - 3D Object Segmentation and Tracking |
11 |
|
3D, time-series |
Volocity |
Software |
… be refined, e.g. using "Separate Touching Objects"; and tracking results in the form of "Measurement Items" can be … a graph, etc. has function Image feature detection Object tracking Entry Curator graemeball Post date 12/08/2014 - … TrackinginVolocity.pdf Documentation Link video tutorial Tracking in Volocity4 … migration.tool … 4065 … 4023 … Image … |
| HyphaTracker |
10.985 |
|
2D, time-series |
ImageJ |
Software |
… Image analysis Filament tracing Image segmentation Object tracking Drift correction Image processing has topic Light … … neuron image analysis … neuron reconstruction … Tracking … Image pre-processing … Image filtering … Image … analysis … Filament tracing … Image segmentation … Object tracking … Drift correction … Image processing … Light … |
| Automatic 2D/3D Tracking using ilastik |
10 |
|
2D, 3D, time-series |
ilastik |
Software |
… It is best suitable for roundish objects or spots. Tracking is done through segmentation, which can be obtained … inherit this ID. has function Image segmentation Object tracking has topic Bioimage informatics Machine learning has … … ilastik team … 4004 … 4023 … 4155 … 4126 … Tracking … Bioimage analysis … Artificial intelligence … … |
| Track Processor Instant Speed |
10 |
|
|
Workbooks (Icy), Spot detection utilities, Track Manager, EBImage display |
Software |
… of tracks for the Icy Track Manager. has function Object tracking Trajectory analysis has topic Live sample imaging … … 4940 … Fabrice de Chaumont … 4023 … 4768 … 4043 … 4003 … Tracking … Optical microscopy … Optical microscope … Light microscope … basic_html … lplantard … Object tracking … Trajectory analysis … Live sample imaging … Light … |
| Measure cell volume over time |
9.92 |
|
3D, time-series |
ImageJ, Imaris |
Software |
… combining an ImageJ macro for preprocessing and successive tracking using Imaris. The sample dataset ( available in … frames that has to be corrected before cell detection and tracking. The workflow consists of following steps: 1. Import … object detection as "Imaris Surface Object" [Imaris] 8. Tracking cell objects over time [Imaris] 9. Split Tracks (use … |
| Aivia - Aivia Cloud - Aivia Web |
9 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… classification Object counting Texture extraction Object tracking Cell tracking Particle tracking Annotation Classification Editing Image … |
| Particle Tracking (ImageJ) |
9 |
|
2D, time-series |
ImageJ, FeatureJ Laplacian |
Software |
… License/Openness Free and open source Description Particle tracking in 2D time-lapse based on linking closest regional … distance is set (user defined). has function Particle tracking has topic Bioimage informatics has biological terms … 20:23 Download Page Neubias BIAFLOWS workflow of Particle Tracking with ImageJ has comparison BIAFLOWS-PROBLEM: … |
| 2D cell tracking and analysis of morphological dynamics |
9 |
|
2D, time-series |
ImageJ, QuimP |
Software |
… and includes model-based cell segmentation, cell outline tracking and quantification of the spatially resolved speed … has function Cell segmentation Active contours Cell tracking has biological terms membrane dynamics cell … Publication Link Tyson et al (2010) High Resolution Tracking of Cell Membrane Dynamics in Moving… … … |
| SpotFinderZ |
9 |
|
2D, time-series |
MATLAB |
Software |
… by appending additional fields.* has function Object tracking has topic Bioimage informatics has biological terms … … migration.tool … 4023 … 4155 … Tracking … Bioimage analysis … basic_html … kota … Object tracking … Bioimage informatics … Quote: *SpotFinderZ (from … |
| Tracking Performance Measures |
9 |
|
2D, 3D, time-series |
Spot detection utilities, Track Manager |
Software |
… Free and open source has function Analysis Object tracking has topic Bioimage informatics Data sharing … 17:03 Download Page http://icy.bioimageanalysis.org/plugin/Tracking-Performance-Measures/ Documentation Link http://icy.bioimageanalysis.org/plugin/Tracking-Performance-Measures/ Reference Publication Link … |
| Object Tracking (ImageJ) |
9 |
|
2D, time-series |
ImageJ |
Software |
… License/Openness Free and open source Description Object tracking. For each time-frame, an image mask is obtained from … and accounted for to relabel objects. has function Object tracking has topic Live sample imaging has biological terms … - 19:40 Download Page Neubias BIAFLOWS workflow of Object Tracking with ImageJ has comparison BIAFLOWS-PROBLEM: … |
| Imaris |
8.935 |
|
|
Imaris |
Software |
… GB). It performs both manual and automated detection and tracking of biological objects such as cells, nuclei, … has function Image registration Object detection Object tracking Visualisation has topic Multimodal imaging Entry … … Particle detection … Isolated object detection … Tracking … Plotting … basic_html … dscho … Image registration … |
| ImageJ Plugin LineageTracker |
8.892 |
|
2D, time-series |
ImageJ |
Software |
… Application example. 2631: Plugin Paper. has function Cell tracking has topic Bioimage informatics Fluorescence … 4155 … 4022 … Bioimage analysis … basic_html … kota … Cell tracking … Bioimage informatics … Fluorescence microscopy … … |
| SLOTH |
8 |
|
2D, time-series |
SciPy, NumPy, Python, matplotlib |
Software |
… and open source License GPLv3 Description A collection for tracking microtubule dynamics, written in Python. has function Object … … Fluorescence microscopy … A collection for tracking microtubule dynamics, written in Python. … SLOTH … |
| Manual Tracking ImageJ |
8 |
|
2D, 3D, time-series |
Fiji |
Software |
… and open source Description An ImageJ plugin for manually tracking objects by mouse clicking. This plugin is bundled with Fiji. has function Object tracking has topic Live sample imaging Fluorescence … … 4478 … Fabrice Cordelieres … 4023 … 4043 … 4022 … Tracking … basic_html … migration … Object tracking … Live … |
| Mice Profiler Tracker |
8 |
|
2D, time-series |
|
Software |
… multiple mice from a top view video. has function Object tracking Trajectory analysis has topic Bioimage informatics … Video tutorial … migration.tool … 4023 … 4768 … 4155 … Tracking … Bioimage analysis … basic_html … czhang … Object tracking … Trajectory analysis … Bioimage informatics … Mice … |
| PTA2 |
8 |
|
2D |
Fiji |
Software |
… is an ImageJ1.x plugins that enable automatic particle tracking" This plugin is developed specifically for single-molecule imaging, so it's good at tracking spots with noisy background. has function Particle tracking has topic Bioimage informatics has biological terms … |
| Nuclei Tracking (ImageJ) |
8 |
|
3D, time-series |
ImageJ |
Software |
… License/Openness Free and open source has function Object tracking has biological terms nuclei nucleus Entry Curator … Step 7: Multiply images ImageJ Object detection Step 8: tracking ImageJ Macro Image processing Download Page Neubias BIAFLOWS workflow of nuclei tracking with ImageJ has comparison BIAFLOWS-PROBLEM: … |
| Particle Tracker |
8 |
|
3D, time-series |
ImageJ, MosaicSuite |
Software |
… Free and open source has function Spot detection Particle tracking Trajectory analysis has topic Bioimage informatics … Reference Publication Link Feature Point Tracking and Trajectory Analysis for Video Imaging in Cell … Bioimage analysis … migration … Spot detection … Particle tracking … Trajectory analysis … Bioimage informatics … … |
| Ctrax - Caltech Multiple Fly Tracker |
8 |
|
|
|
Software |
… maintained and documented project that includes a core tracking incl. GUI as well as Matlab toolboxes to (1) correct tracking results and (2) analyze fly behavior. >Ctrax is an … to other labs' setups. We have assessed the quality of the tracking results for our setup, and found that it can … |
| SpotTracker |
8 |
|
2D, time-series |
ImageJ |
Software |
… Free and open source has function Spot detection Particle tracking has topic Bioimage informatics Fluorescence … Reference Publication Link Automatic Tracking of Individual Fluorescence Particles: Application to … analysis … FLIM … migration … Spot detection … Particle tracking … Bioimage informatics … Fluorescence microscopy … … |
| MaMuT |
8 |
|
2D, 3D, multi-channel, time-series |
Fiji, BigDataViewer, TrackMate |
Software |
… image data. has function Image feature detection Object tracking Cell tracking Image visualisation Overlay Plotting Image … … 4172 … 4773 … 4043 … 4068 … Image feature extraction … Tracking … Rendering … Lookup table … LSFM … Digitally … |
| ELEPHANT |
7.981 |
|
2D, 3D, time-series |
|
Software |
… open source Description ELEPHANT is a platform for 3D cell tracking, based on incremental and interactive deep learning. … and visualization. has function Object detection Cell tracking Trajectory analysis Visualisation has topic Bioimage … Link Online documentation Reference Publication Link Tracking cell lineages in 3D by incremental deep learning … |
| SLEAP |
7.92 |
|
2D, time-series |
Tensorflow, NumPy, Python |
Software |
… source deep learning based framework for multi-animal pose tracking. It can track animal and any number of animals and … GUI for learning and proofreading. has function Object tracking has topic Machine learning has biological terms … Link SLEAP: A deep learning system for multi-animal pose tracking (Nature Methods pu… … lascholz … 5141 … Pereira, … |
| MosaicSuite |
7.506 |
|
2D, 3D, time-series |
Fiji, ImageJ 2.x |
Software |
… microscopy. Tools included: 2D/3D single-particle tracking tool which can be used to track bright spots in … tracing Spot detection Image segmentation Particle tracking Image convolution Illumination correction … tracing … Spot detection … Image segmentation … Particle tracking … Image convolution … Illumination correction … … |
| Cell segmentation and quantification with CellX |
7 |
|
|
Matlab Image Processing Toolbox, MATLAB |
Software |
… for cell segmentation, intensity quantification, and cell tracking on a variety of microscopy images with … pattern on cells thus provide segmentation and further tracking. It works the best on cells without extreme shapes … subsequent analysis. has function Image segmentation Cell tracking has topic Bright field microscopy Phase contrast … |
| MTrack2 (ImageJ) |
7 |
|
2D, time-series |
ImageJ |
Software |
… Free and open source has function Isolated object tracking has topic Bioimage informatics Additional keywords … … 4155 … Bioimage analysis … migration … Isolated object tracking … Bioimage informatics … MTrack2 (ImageJ) … |
| Imaris Tracking |
7 |
|
|
Imaris, Imaris |
Software |
… I do not know Description ImarisTrack allows 3D tracking of spots and objects, with straightforward manual adjustment of automatic tracking results. Entry Curator graemeball Post date … Bitplane … basic_html … graemeball … ImarisTrack allows 3D tracking of spots and objects, with straightforward manual … |
| Track Processor export track to Excel |
7 |
|
|
Track Manager, EBImage display |
Software |
|
| 3D cell tracking and quantification of shape changes |
7 |
|
|
MATLAB |
Software |
… not know Description The workflow includes segmentation, tracking and quantifying morphological dynamics of moving … description in the original paper. has function Cell tracking has biological terms Dictyostelium Additional … T … 4207 … basic_html … christoph_moehl … Cell tracking … The workflow includes segmentation, tracking and … |
| 3D cell tracking using Gaussian Mixture Model (TGMM) |
7 |
|
|
|
Software |
… Free and open source Description TGMM is a cell tracking solution for large 3D volume (typically lightsheet). … CUDA and is called via the command line. has function Cell tracking has topic Bioimage informatics Live sample imaging … … diSPIM … COLM … SPED … mSPIM … iSPIM … basic_html … Cell tracking … Bioimage informatics … Live sample imaging … … |
| OligoMacro Toolset |
7 |
|
2D, time-series |
StackReg, TurboReg |
Software |
… at isolating oligodendrocytes from wide-field images, tracking isolated cells, characterizing processes morphology … graphs. has function Image analysis Cell segmentation Cell tracking Plotting has topic Live sample imaging In-vitro … Image processing Step3: Track cells ImageJ Macro Cell tracking Step4: Cut out cells ImageJ Macro Analysis Step5: R … |
| Track cell intensity |
7 |
|
2D, time-series |
|
Software |
… image of the video. has function Active contours Cell tracking Additional keywords intensity measurement Entry … Snakes … basic_html … marielaureb … Active contours … Cell tracking … Tracks a cell in a 2D video using active contours, … |
| Cicardian Gene Expression |
7 |
|
2D, time-series |
ImageJ |
Software |
… level. CGE extracts the trajectory of the cells by tracking their displacements, makes the delineation of cell … expression level, cell displacement." has function Cell tracking Additional keywords intensity measurement Entry … 4555 … Daniel Sage … 4207 … basic_html … migration … Cell tracking … "This ImageJ plugin (CGE) is a semi-automatic tool … |
| Track Processor Track Length |
7 |
|
|
Track Manager |
Software |
|
| Track Processor Zero Origin |
7 |
|
2D, 3D |
Track Manager |
Software |
|
| Cell segmentation in phase contrast images |
6 |
|
2D |
MATLAB |
Software |
… has function Cell segmentation Active contours Object tracking Cell tracking has topic Phase contrast microscopy Additional … … Active contour model … Active contour models … Snakes … Tracking … Phase imaging … Quantitative phase contrast … |
| Track Processor Intensity Profile |
6 |
|
2D, time-series |
Icy, Spot detection utilities, Track Manager |
Software |
|
| Track Processor Display Track Number |
6 |
|
|
Track Manager, EBImage display |
Software |
|
| TrackObjects |
6 |
|
2D |
CellProfiler |
Software |
… License/Openness I do not know has function Object tracking has topic Bioimage informatics Entry Curator … Link TrackObjects module … migration.tool … 4023 … 4155 … Tracking … Bioimage analysis … migration … Object tracking … Bioimage informatics … TrackObjects … |
| OrganoID |
5.973 |
|
2D, time-series |
Python |
Software |
… Cell segmentation Object feature extraction Object tracking has topic Live sample imaging Bright field … DOI link OrganoID: A versatile deep learning platform for tracking and analysis of singl… … czhang … 4372 … 4477 … 3585 … 4116 … 4126 … Feature detection … Image labeling … SURF … Tracking … Phase imaging … Quantitative phase contrast … |
| Spot detection utilities |
5 |
|
time-series |
|
Software |
… can be used by plugins performing spot detection and spot tracking. has function Spot detection Particle tracking has topic Bioimage informatics has biological terms … analysis … basic_html … czhang … Spot detection … Particle tracking … Bioimage informatics … A set of classes and … |
| Filopodyan |
5 |
|
2D, time-series |
ImageJ, Fiji |
Software |
… but not open source Description Fiji plugin for detecting, tracking and quantifying filopodia has function Image analysis Filament tracing Object tracking has topic Fluorescence microscopy has biological … … neuron image analysis … neuron reconstruction … Tracking … basic_html … Perrine … Image analysis … Filament … |
| CellStitch |
5 |
|
2D, 3D, time-series |
Python |
Software |
… based models. One could also think about using it for cell tracking by overlap (using time as a third dimension). has function Cell segmentation Cell tracking Image reconstruction has topic Microscopy Electron … scanner … basic_html … Perrine … Cell segmentation … Cell tracking … Image reconstruction … Microscopy … Electron … |
| Larva-Tracking (KNIME) |
5 |
|
2D, time-series |
KNIME |
Software |
… source has function Image segmentation Isolated object tracking has topic Bioimage informatics has biological terms … … alban.gaignard … Image segmentation … Isolated object tracking … Bioimage informatics … Larva-Tracking (KNIME) … |
| SpotFinderM |
5 |
|
time-series |
|
Software |
… runs from MATLAB only. * has function Spot detection Cell tracking has topic Bioimage informatics Fluorescence … analysis … basic_html … kota … Spot detection … Cell tracking … Bioimage informatics … Fluorescence microscopy … … |
| arivis Vision4D |
5 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… Pipeline for 3D /4D image analysis (cell segmentation, tracking, annotation, quantitative measurement and … statistics, etc) Semi-automatic/manual segmentation and tracking with interactive Track Editor Easy design and export … Pipeline for 3D /4D image analysis (cell segmentation, tracking, annotation, quantitative measurement and … |
| Icy Particle tracking benchmark generator |
5 |
|
2D, 3D |
Spot detection utilities, Track Manager, Icy Spot Tracking |
Software |
… Requires Spot detection utilities Track Manager Icy Spot Tracking Execution Platform Linux Mac Windows Implementation … Page http://icy.bioimageanalysis.org/plugin/Particle-tracking-benchmark-generator/ … migration.tool … Nicolas … … Synthetic image generation … Imaging … Icy Particle tracking benchmark generator … |
| Track Processor Z Clip |
5 |
|
3D |
Track Manager |
Software |
|
| Oufti |
5 |
|
2D |
MATLAB |
Software |
… . has function Cell segmentation Spot detection Cell tracking has topic Fluorescence microscopy Bright field … … graemeball … Cell segmentation … Spot detection … Cell tracking … Fluorescence microscopy … Bright field microscopy … |
| Track Processor Flow |
5 |
|
3D |
Track Manager |
Software |
|
| Focal Adhesion Analysis Server |
4.985 |
|
|
|
Software |
… developed an analysis system for the automated detection, tracking, and data extraction of these structures in living … of properties into distinct zones. has function Object tracking has biological terms Focal Adhesion Additional … Eric A. Vitriol … Klaus M. Hahn … Shawn M. Gomez … 4023 … Tracking … basic_html … migration … Object tracking … The … |
| Rivulet |
4.688 |
|
3D |
MATLAB |
Software |
… on the multi-stencils fast-marching and iterative back-tracking. The proposed Rivulet algorithm is capable of … Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking Usage Example Link Rivulet: 3D Neuron Morphology Tracing with Iterative Back-Tracking has comparison Rivulet: 3D Neuron Morphology Tracing … |
| SOAX |
4 |
|
2D, 3D |
Active Contours |
Software |
|
| Track Processor ROI Gate |
4 |
|
2D |
Track Manager |
Software |
|
| Track Processor Time Clip |
4 |
|
time-series |
Track Manager |
Software |
|
| LobSTer |
4 |
|
2D, 3D, time-series |
MATLAB |
Software |
… Description LOBSTER (Little Objects Segmentation and Tracking Environment), an environment designed to help … GUI matlab based has function Cell segmentation Object tracking has topic Bioimage informatics Fluorescence … 3599 … Sébastien Tosi … 4083 … 4023 … 4155 … 4022 … 4126 … Tracking … Bioimage analysis … Artificial intelligence … … |
| Cells tracking in tissue |
4 |
|
|
ImageJ, MATLAB, Graylevel Watershed for ImageJ |
Software |
… of the cells of a tissue with membrane labelling. … Cells tracking in tissue … |
| 3D Active Meshes (Icy) |
4 |
|
2D, 3D |
Spot detection utilities, Icy HK-Means, EzPlug SDK, Icy Protocols SDK |
Software |
… Free and open source has function Cell segmentation Cell tracking has topic Bioimage informatics Additional keywords … Active Meshes: Fast Discrete Deformable Models for Cell Tracking in 3-D Tim… … migration.tool … 4686 … 4653 … 5111 … … … Bioimage analysis … czhang … Cell segmentation … Cell tracking … Bioimage informatics … 3D Active Meshes (Icy) … |
| Manual Frame Drift Registration |
4 |
|
2D, time-series |
ImageJ, Manual Tracking ImageJ |
Software |
… Type Component Author Kota Miura Requires ImageJ Manual Tracking ImageJ Execution Platform Linux Mac Windows … you to Manually track the landmark using ImageJ Manual Tracking Plugin. Using the coordinates recorded in the Result … you to Manually track the landmark using ImageJ Manual Tracking Plugin. Using the coordinates recorded in the Result … |
| Track Processor Speed Profiler |
4 |
|
|
Track Manager |
Software |
|
| ImarisTrack |
4 |
|
|
Object Tracking and Metadata Management, Imaris |
Software |
… Type Component Requires Object Tracking and Metadata Management Imaris Interaction Level … |
| JFilament |
4 |
|
2D, 3D, time-series |
ImageJ |
Software |
… JFilament is an ImageJ plugin for segmentation and tracking of 2D and 3D filaments in fluorescenece microscopy … which can be used for tasks such as segmentation and tracking of cell boundaries. has function Filament tracing … … JFilament is an ImageJ plugin for segmentation and tracking of 2D and 3D filaments in fluorescenece microscopy … |
| Track Processor MSD |
4 |
|
3D, time-series |
Track Manager |
Software |
|
| FigureJ |
4 |
|
2D, 3D, multi-channel, time-series |
ImageJ |
Software |
|
| RodCellJ |
4 |
|
2D, 3D, time-series |
ImageJ |
Software |
… Free and open source has function Cell segmentation Cell tracking has topic Bioimage informatics Fluorescence … … Bioimage analysis … migration … Cell segmentation … Cell tracking … Bioimage informatics … Fluorescence microscopy … … |
| BisQue |
4 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… such as CellProfiler, RootTipMultin Nuclear Tracker, Microtubule tracker etc... Bisque was developed for the … such as CellProfiler, RootTipMultin Nuclear Tracker, Microtubule tracker etc... Bisque was developed for the … |
| MIA |
3.814 |
|
2D, 3D, multi-channel, time-series |
Fiji, MorphoLibJ |
Software |
… Image segmentation Object counting Object detection Object tracking Morphological operation Image visualisation has … … Particle detection … Isolated object detection … Tracking … Morphological image processing … Mathematical … segmentation … Object counting … Object detection … Object tracking … Morphological operation … Image visualisation … … |
| ICY Active Cells SDK |
3 |
|
2D, 3D |
Active Contours |
Software |
… has function Image segmentation Active contours Object tracking has topic Bioimage informatics Additional keywords … … Active contour model … Active contour models … Snakes … Tracking … Bioimage analysis … basic_html … migration … Image segmentation … Active contours … Object tracking … Bioimage informatics … This is an icy package that … |
| OpenCV feature2d module |
3 |
|
2D |
OpenCV |
Software |
… Image feature detection Object feature extraction Object tracking has topic Bioimage informatics Additional keywords … extraction … Feature detection … Image labeling … SURF … Tracking … Bioimage analysis … Feature-based registration … … feature detection … Object feature extraction … Object tracking … Bioimage informatics … OpenCV feature2d module … |
| bleb dynamics |
3 |
|
2D, multi-channel, time-series |
Gaussian blur in ImageJ, Otsu Thresholding, radial reslice, kymograph generation |
Software |
… is .... First you need has function Shape features Cell tracking has topic Fluorescence microscopy Confocal … … SDCM … basic_html … juanmagararc … Shape features … Cell tracking … Fluorescence microscopy … Confocal fluorescence … |
| MicrobeJ |
3 |
|
2D, 3D, multi-channel |
ImageJ |
Software |
… Analysis Image thresholding Object detection Object tracking Morphological operation has topic Bioimage … … Particle detection … Isolated object detection … Tracking … Morphological image processing … Mathematical … Analysis … Image thresholding … Object detection … Object tracking … Morphological operation … Bioimage informatics … … |
| Quantitative analysis of focal adhesion dynamics |
3 |
|
2D, time-series |
MATLAB |
Software |
… archive (linked under "Download"). has function Particle tracking has biological terms Focal Adhesion Actin Entry … … Christoph Möhl … 4141 … markdown … Niko Kladt … Particle tracking … The quantification is explained in detail in … |
| kymograph generation |
3 |
|
|
ImageJ |
Software |
… line you have drawn. has function Image analysis Object tracking has topic Bioimage informatics Entry Curator Perrine … … 4111 … 4023 … 4155 … General image analysis … Tracking … Bioimage analysis … basic_html … Perrine … Image analysis … Object tracking … Bioimage informatics … Kymograph generation under … |
| MosaicIA |
3 |
|
3D, time-series |
Fiji, MosaicSuite |
Software |
… Image segmentation Interactive segmentation Particle tracking has topic Bioimage informatics Entry Curator flevet … … Image segmentation … Interactive segmentation … Particle tracking … Bioimage informatics … MosaicIA is a tool to … |
| Huygens |
3 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… colocalisation Single molecule localisation Object tracking Image deconvolution Chromatic aberration correction … image reconstruction … PALM image reconstruction … Tracking … Channel shift correction … Rendering … Lookup … colocalisation … Single molecule localisation … Object tracking … Image deconvolution … Chromatic aberration … |
| Myotracker |
3 |
|
2D |
Fiji |
Software |
|
| 3View import list |
3 |
|
3D |
ImageJ, TrakEM2 |
Software |
… stored in the original directories. has function Object tracking Data handling has topic Serial block-face scanning … migration.tool … 4497 … 4498 … 4524 … 4023 … 4184 … 4088 … Tracking … basic_html … migration … Object tracking … Data handling … Serial block-face scanning … |
| Matlab Computer Vision System Toolbox |
3 |
|
|
MATLAB, Optical Flow, Object Tracking and Metadata Management |
Software |
… Type Collection Requires MATLAB Optical Flow Object Tracking and Metadata Management Execution Platform Windows … for feature detection & extraction, object detection & tracking and motion estimation. Strengths: - Most functions … for feature detection & extraction, object detection & tracking and motion estimation. Strengths: - Most functions … |
| Simple Neurite Tracer |
3 |
|
2D, 3D |
Fiji |
Software |
|
| pyTFM |
3 |
|
2D |
Python |
Software |
… vizualize large datasets. has function Collective object tracking has topic Bioimage informatics Additional keywords … … Bioimage analysis … markdown … kota … Collective object tracking … Bioimage informatics … Quote: pyTFM is a python … |
| @msdanalyzer |
3 |
|
2D, 3D, time-series |
MATLAB Curve Fitting Toolbox, MATLAB |
Software |
|
| DeepCell |
3 |
|
2D, 3D, time-series |
Tensorflow, Keras |
Software |
… (see usage example ) has function Cell segmentation Cell tracking Morphological operation has topic Fluorescence … … basic_html … christoph_moehl … Cell segmentation … Cell tracking … Morphological operation … Fluorescence microscopy … |
| ICS tools |
3 |
|
|
ImageJ |
Software |
… spectroscopy tools has function Image analysis Particle tracking Optical flow analysis has topic Bioimage informatics … … basic_html … czhang … Image analysis … Particle tracking … Optical flow analysis … Bioimage informatics … … |
| Relate |
2.977 |
|
2D, 3D, multi-channel |
|
Software |
… registration Image analysis Image segmentation Particle tracking Image deconvolution Image denoising Visualisation … … Image analysis … Image segmentation … Particle tracking … Image deconvolution … Image denoising … … |
| FARSIGHT |
2.91 |
|
|
Segmentation of Clustered Cells in MATLAB |
Software |
… algorithms for cell segmentation, cell tracing, cell tracking, and vessel tracing. Registration and mosaicing … - GUI is suboptimal compared to commercial packages. - Tracking module requires an external library CPLEX. - No … algorithms for cell segmentation, cell tracing, cell tracking, and vessel tracing. Registration and mosaicing … |
| Microscope Image Correlation Spectroscopy MICS |
2.88 |
|
|
ImageJ |
Software |
… has function Object feature extraction Collective object tracking has topic Image correlation spectroscopy Additional … … Perrine … Object feature extraction … Collective object tracking … Image correlation spectroscopy … Fluorescence … |
| OMERO.figure |
2 |
|
2D, 3D, multi-channel, time-series |
OMERO |
Software |
|
| Temporal Medial Filter |
2 |
|
2D, time-series |
|
Software |
… way to suppress false background detections in subsequent tracking steps. set time window, and standard deviations … way to suppress false background detections in subsequent tracking steps. set time window, and standard deviations … |
| Schnitzcells |
2 |
|
2D, time-series |
MATLAB |
Software |
|
| Mice Profiler Label Analyser |
2 |
|
|
|
Software |
|
| Active Contours |
2 |
|
2D, 3D |
Icy |
Software |
… from an approximate ROI. Supports 2D and 3D images and tracking of slowly moving cells. Ideal to study cell … from an approximate ROI. Supports 2D and 3D images and tracking of slowly moving cells. Ideal to study cell … |
| TTK the Topology Toolkit |
2 |
|
3D |
Paraview |
Software |
… points; · For time-varying scalar data: critical point tracking; · For high-dimensional / point cloud data: … points; · For time-varying scalar data: critical point tracking; · For high-dimensional / point cloud data: … |
| LoG Spot Detection (TrackMate) |
2 |
|
|
Spot Detection (KNIME) |
Software |
|
| THOT |
2 |
|
2D, time-series |
MATLAB |
Software |
… source Description Classification of trajectoire: need tracking results as input and will then classify the … … Statistics … Classification of trajectoire: need tracking results as input and will then classify the … |
| Blender |
2 |
|
3D, time-series |
|
Software |
… animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. has function … animation, simulation, rendering, compositing and motion tracking, even video editing and game creation. … Blender … |
| Spot Detection (Icy) |
2 |
|
|
|
Software |
… Spot Detector Block Wavelet Spot Detector Block Cell tracking Step 2: Run ROI Measure ROI Measure for Icy Cell tracking Download Page Neubias BIAFLOWS workflow of Spot … |
| ASTEC |
2 |
|
3D, multi-channel, time-series |
|
Software |
… Description ASTEC stands for Adaptive Segmentation and Tracking of Embryonic Cells. It proposes a full workflow for … microscopy … ASTEC stands for Adaptive Segmentation and Tracking of Embryonic Cells. It proposes a full workflow for … |
| NET - Network Extraction Tool |
2 |
|
2D |
|
Software |
|
| mamut2r |
2 |
|
|
|
Software |
… files generated with the Fiji MaMuT plugin for lineage and tracking of biological objects. {mamut2r} also allows to … files generated with the Fiji MaMuT plugin for lineage and tracking of biological objects. {mamut2r} also allows to … |
| Pixel Classification using ilastik |
2 |
|
2D, 3D, multi-channel, time-series |
VIGRA, ilastik |
Software |
… by ilastik, such as object classification, automatic tracking. has function Image segmentation Pixel … by ilastik, such as object classification, automatic tracking. … Pixel Classification using ilastik … |
| WormGUIDES Atlas |
2 |
|
3D, multi-channel, time-series |
|
Software |
|
| CellCognition |
2 |
|
|
Segmentation of Clustered Cells in MATLAB, ICY Annotation |
Software |
… visualizing and annotating the phenotypes, classification, tracking and error correction. Events such as mitosis can be … visualizing and annotating the phenotypes, classification, tracking and error correction. Events such as mitosis can be … |
| Scipion |
2 |
|
2D, 3D |
|
Software |
|
| OpenCV / High-level GUI |
2 |
|
|
OpenCV |
Software |
|
| Icy |
1.765 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… download, including those for microscope control, particle tracking, three dimensional segmentation, and even spot … download, including those for microscope control, particle tracking, three dimensional segmentation, and even spot … |
| EvaluateSegmentation Tool |
1 |
|
2D, 3D |
ITK, CMake |
Software |
|
| 3D segmentation of cells based on 2D Cellpose and CellStitch |
1 |
|
3D, multi-channel |
|
Software |
… 2D label association to create 3D labels CellStitch Cell tracking Download Page Jupyter notebook Documentation Link … |
| ImarisXT |
1 |
|
|
ImageJ, Imaris, MATLAB, ImarisCell, ImarisMeasurementPro, ImarisTrack, ImarisFilamentTracer, Python |
Software |
|
| Mask-RCNN |
1 |
|
2D, multi-channel, time-series |
Tensorflow, Keras, Python 3.6 |
Software |
… topic Phase contrast microscopy has biological terms cell tracking Entry Curator lascholz Post date 03/15/2019 - 12:31 … |
| Neuron Tracing 3D (Rivuletpy) |
1 |
|
3D |
|
Software |
… - 20:30 Download Page Neubias BIAFLOWS workflow of Neuron Tracking with Rivuletpy (Rivulet 2) Reference Publication … |
| Log3D |
1 |
|
2D, 3D |
ImageJ |
Software |
… Reference Publication Link Sage et al. (2005) Automatic tracking of individual fluorescence particles: app… … … |
| Neuron Tracing Vaa3D (App2) |
1 |
|
3D |
Vaa3D, APP2 |
Software |
… - 19:43 Download Page Neubias BIAFLOWS workflow of Neuron Tracking with Vaa3d APP2 Reference Publication Link APP2: … |
| Skeletonize3D |
1 |
|
2D, 3D |
ImageJ |
Software |
|
| Super-Resolution Radial Fluctuations (SRRF) |
1 |
|
2D, time-series |
ImageJ |
Software |
|
| Globals for Images SimFCS 4 |
1 |
|
2D, 3D, multi-channel, time-series |
|
Software |
… (RICS and STICS) Single Particle and Modulation Tracking (SPT, MT) Image Mean Square Displacement (iMSD) Pair … (RICS and STICS) Single Particle and Modulation Tracking (SPT, MT) Image Mean Square Displacement (iMSD) Pair … |
| NanoJ |
1 |
|
2D, 3D |
ImageJ |
Software |
|
| OpenCV |
1 |
|
|
Object Tracking and Metadata Management |
Software |
… Type Collection Requires Object Tracking and Metadata Management Execution Platform Windows … |
| DeconvolutionLab2 |
0.876 |
|
3D |
ImageJ |
Software |
|
