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Name Category Image requires Type interaction level License/Openness has function has topic
BBBC002v1 Dataset Drosophila Kc167 cells
EBImage Software EBImage Bioconductor Collection Manual Free and open source Image analysis, Image segmentation, Image processing, Geometrical transformation, Morphological operation Bioimage informatics, High content screening
(Z,T) Hyperstack Stitcher Software ImageJ Component Semi-automated Free and open source Alignment construction, Data handling, Image stitching Bioimage informatics, Microscopy
(Z,T,C) Stitcher Software ImageJ Component Semi-automated Free and open source Image stitching Microscopy
2-D Colocalisation in Cells Software CellProfiler, CellProfiler Workflow Automated Free and open source Colocalisation analysis, Object-based colocalisation
2D and 3D mitochondrial shape analysis and network properties Software ImagePro Workflow Automated Commercial Analysis, Image segmentation Confocal fluorescence microscopy
2D and 3D tracking based on global cost function optimization Software ImageJ, MTrackJ, ImageScience.jar, Jama, Tracking2.0 Workflow Automated Free and open source Object tracking, Particle tracking, Trajectory analysis Bioimage informatics, Machine learning
2D brain slice region annotation: SliceMap Software Example: SliceMaps brain region segmentation Workflow Semi-automated Free and open source Image registration, Image segmentation Widefield microscopy, Fluorescence microscopy
2D bright field yeast cell images with ground truth annotations Dataset 2D bright field yeast cell images
2D cell tracking and analysis of morphological dynamics Software ImageJ, QuimP Workflow Semi-automated I do not know Cell segmentation, Active contours, Cell tracking
2D Gaussian fitting macro (Fiji/ImageJ) for multiple signals. Software ImageJ, Fiji Workflow Semi-automated Free and open source Image analysis, Single molecule localisation Bioimage informatics, Single molecule localization microscopy
2D image processing and Data analysis with Matlab Training Material
2D spots counting using KNIME Software KNIME Image Processing and Analysis Workflow Automated Free and open source Spot detection
2D tracking using KNIME and Fiji Software KNIME Image Processing and Analysis, Fiji Workflow Semi-automated Free and open source Object tracking
2D-3D distributed parallel region competition segmentation Software need a thumbnail Component Automated Free and open source Image segmentation Bioimage informatics
3-D Density Kernel Estimation Software Jupyter notebook, Python, VIGRA, scikit-learn (sklearn), scikit-image Workflow Manual Free and open source Pixel classification, Prediction and recognition, Object counting Confocal microscopy, Machine learning
3D Active Meshes (Icy) Software Spot detection utilities, Icy HK-Means, EzPlug SDK, Icy Protocols SDK Component Automated Free and open source Cell segmentation, Cell tracking Bioimage informatics
3D affine transformation based on paired points Software Fiji Component Automated Free and open source Affine transformation, Linear transformation
3D Area Software need a thumbnail Processing Component Automated I do not know
3D cell tracking and quantification of shape changes Software need a thumbnail MATLAB Workflow Automated I do not know Cell tracking