2D cell tracking and analysis of morphological dynamics
The QuimP software from Bretschneider group is deployed as ImageJ plugin and includes model-based cell segmentation, cell outline tracking and quantification of the spatially resolved speed of protrusions and retractions. The algorithm to calculate morphological dynamics is faster compared to other approaches (e.g. [Machacek and Danuser, 2006](https://www.ncbi.nlm.nih.gov/pmc/articles/PMC1367294/)). The reference paper describes the workflow for these analyses.