| |
1677
|
Programming
|
Robert Haase, DFG Cluster of Excellence, "Physics of Life", TU Dresden
|
Workshop material
|
|
Image classification
|
|
| |
1676
|
|
Robert Haase, DFG Cluster of Excellence, "Physics of Life", TU Dresden
|
video tutorial
|
|
Image convolution
|
|
| |
1675
|
|
Robert Haase, DFG Cluster of Excellence, "Physics of Life", TU Dresden
|
Workshop material
|
|
ImageJ Macros
|
Max Planck BioImaging Core Unit Network - Advanced ImageJ Macro Course, 2021
|
| |
1674
|
licensing
|
Robert Haase, DFG Cluster of Excellence, "Physics of Life", TU Dresden
|
Workshop material
|
|
Data sharing
|
EMBO Practical Course on Advanced Methods in Bioimage Analysis 2021
|
| |
1673
|
|
Robert Haase, DFG Cluster of Excellence, "Physics of Life", TU Dresden
|
Workshop material
|
|
Interactive segmentation
|
Smart Microscopy Workshop at the Center for Cellular imaging at the University …
|
| |
1669
|
|
|
Tutorial
|
This lesson assumes you have a working knowledge of Python and some previous exposure to the Bash shell.
|
Image processing
|
|
| |
1668
|
|
Jan Eglinger, Stephan Hellfrish, Aliaksandr Halavatyi, Christian Tischer, Toby Hodges, Antonio Politi
|
Tutorial
|
None if staring from first module, otherwise prerequisites are indicated for each module.
|
Image segmentation, Image processing, Image convolution
|
|
| |
1654
|
High content single cell phenotypic profiling, Deep learning in microscopy, Public data repositories, data harmonization, integration and fusion, Data-modeling of live cell imaging
|
Assaf Zaritsky
|
|
No prior biological knowledge is required; all background will be covered in the lectures. Some background in mathematics and programming is required. Prior knowledge in machine learning and/or computer vision is highly recommended, but not necessary.
|
Bioimage informatics, Machine learning
|
|
| |
1643
|
protocols, Icy, automation, reproducibility
|
Marion Louveaux
|
video tutorial
|
Basic image analysis concepts.
Target audience
Early Careers: Ideally suited. Learn how to make reproducible automated bioimage analysis workflows even without programming knowledge
Bioimage Analysts / Facility Staff: Very useful for teaching purposes and if you need to quickly deliver modifiable, reusable workflows to non-programming user
|
|
Recording of the webinar
|
| |
1581
|
|
Marion Louveaux
|
|
|
|
NEUBIAS TS10 (Luxembourg)
|
| |
1580
|
|
RASTI Pejman , ROUSSEAU David
|
video tutorial
|
Coding notions
|
Machine learning, Classification
|
|
| |
1554
|
|
Zaritsky Assaf
|
Tutorial
|
Bio image analysts
|
Collective object tracking
|
/neubias-ts7-0
|
| |
1552
|
|
Urbancic Vasja, Butler Richard
|
Tutorial
|
Bio image analysts
|
Filament tracing, Isolated object tracking
|
/neubias-ts7-0
|
| |
1551
|
|
Molnar Csaba
|
Tutorial
|
bio image analysts
|
High content screening
|
/neubias-ts7-0
|
| |
1550
|
|
|
Tutorial
|
Early Carreer Investigators without previous experience with image analysis or ImageJ
|
Montage
|
/neubias-ts5
|
| |
1549
|
|
Cordelieres Fabrice P
|
Tutorial
|
Early Carreer Investigators without previous experience with image analysis or ImageJ
|
|
/neubias-ts5
|
| |
1548
|
|
Cordelieres Fabrice P.
|
Tutorial
|
Early Carreer Investigators without previous experience with image analysis or ImageJ
|
Spot detection, Object counting, Object detection
|
/neubias-ts2
|
| |
1547
|
|
Miura Kota, Pengo Thomas, Noerrelykke Simon
|
Tutorial
|
Must understand basics of Matlab as in the Training Material "Introduction to Matlab"
|
Particle tracking
|
/neubias-ts1
|
| |
1546
|
|
Cardone Giovanni
|
Tutorial
|
Must understand basics of Matlab as in the TM "Introduction to Matlab"
|
Visualisation
|
/neubias-ts1
|
| |
1545
|
|
de Castro Aguiar Paulo, Cardone Giovanni, Lindblad Joakim
|
Tutorial
|
Must understand basics of Matlab as in the TM "Introduction to Matlab"
|
Image segmentation
|
/neubias-ts1
|
| |
1544
|
|
de Castro Aguiar Paulo, Cardone Giovanni, Lindblad Joakim
|
Tutorial
|
Matlab, for Beginners
|
|
/neubias-ts1
|
| |
1543
|
|
Klemm Anna
|
|
Early Carreer Investigators without previous experience with image analysis or ImageJ
|
|
/neubias-ts2
|
| |
1542
|
|
Martins Nuno
|
Tutorial
|
Early Carreer Investigators without previous experience with image analysis or ImageJ
|
|
/neubias-ts2
|
| |
1541
|
|
Klemm Anna
|
Tutorial
|
Early Carreer Investigators without previous experience with image analysis or ImageJ
|
Image visualisation
|
/neubias-ts4
|
| |
1540
|
|
Martins Nuno
|
Tutorial
|
Early Carreer Investigators without previous experience with image analysis or ImageJ
|
Image visualisation
|
/neubias-ts2
|
| |
1539
|
|
Helfrich Stefan
|
Tutorial
|
|
Montage
|
/neubias-ts5
|
| |
1538
|
|
Tisher Christian, Tosi Sebastien
|
Tutorial
|
ImageJ Macros
|
Filament tracing, Visualisation, Fluorescence microscopy, Light-sheet microscopy
|
/neubias-ts1
|
| |
1537
|
|
Miura Kota
|
Book Chapter, Tutorial
|
|
|
|
| |
1536
|
|
Golani Ofra, Reinat Nevo
|
|
|
Spot detection, Visualisation, Particle tracking, Plotting, Surface rendering
|
|
| |
1535
|
|
Wahlby Carolina
|
Tutorial
|
None
|
Cell segmentation, Cell tracking, Spot detection
|
/neubias-ts2
|
| |
1534
|
|
Horn Martin
|
|
|
|
/neubias-ts3
|
| |
1533
|
|
Dufour Axexandre
|
|
|
|
/neubias-ts3
|
| |
1532
|
|
Beati Igor
|
Tutorial
|
Bio Image Analysts
|
Spot detection
|
/neubias-ts3
|
| |
1531
|
|
Rueden Curtis
|
Tutorial
|
Bio Image Analysts
|
|
/neubias-ts3
|
| |
1530
|
|
Tinevez Jean-Yves
|
|
Bio Image Analysts
|
|
/neubias-ts3
|
| |
1529
|
|
Jug Florian, Pietzsch Tobias
|
|
|
Visualisation, Data handling
|
/neubias-ts7-0
|
| |
1528
|
|
Cordelières Fabrice P.
|
|
Bio Image Analysts
|
Colocalisation analysis, Object-based colocalisation, Pixel-based colocalisation
|
/neubias-ts7-0
|
| |
1526
|
|
Beth Cimini
|
|
|
Machine learning
|
|
| |
1525
|
|
Karhohs Kyle
|
Tutorial
|
no need for programmation
|
Cell segmentation, Machine learning
|
|
| |
1524
|
|
Arganda-Carreras Ignacio
|
Tutorial
|
|
Cell segmentation, Morphological operation
|
/neubias-ts5
|
| |
1523
|
|
Martins Nuno P.
|
|
|
|
/neubias-ts4
|
| |
1522
|
|
Tosi Sébastien
|
|
|
Image processing
|
/neubias-ts3
|
| |
1521
|
|
Levet Florian
|
Tutorial
|
Bio Image Analyst
|
Super-resolution microscopy
|
/neubias-ts3
|
| |
1520
|
|
Aguiar Paulo
|
Tutorial
|
must understand basic operations in imageJ
|
Morphological operation
|
/neubias-ts2
|
| |
1519
|
|
|
|
|
|
|
| |
1518
|
|
|
|
|
|
|
| |
1517
|
|
|
|
|
|
|
| |
1516
|
|
|
|
|
|
|
| |
1515
|
|
|
|
|
|
|
| |
1513
|
|
|
|
|
|
|
| |
1512
|
|
|
|
|
|
|
| |
1511
|
|
|
|
|
|
|
| |
1510
|
|
|
|
|
|
|
| |
1509
|
|
|
|
|
|
|
| |
1508
|
|
Cordelières Fabrice P.
|
Tutorial
|
must understand basic operations in imageJ
|
Image visualisation
|
|
| |
1507
|
|
Cordelières Fabrice P.
|
Tutorial
|
must understand basic operations in imageJ
|
Visualisation
|
|
| |
1506
|
|
Sampaio Paula
|
Tutorial
|
must understand basic operations in imageJ
|
Image analysis
|
|
| |
1505
|
|
Sampaio Paula
|
Tutorial
|
must understand basic operations in imageJ
|
Image processing
|
/neubias-ts2
|
| |
1504
|
|
Tisher Christian
|
Tutorial
|
Early Carreer Investigators without previous experience with image analysis or ImageJ
|
Contrast enhancement, Conversion
|
/neubias-ts2
|
| |
1503
|
|
Paul-Gilloteaux Perrine
|
Tutorial
|
|
Bioimage informatics
|
/neubias-ts2
|
| |
1502
|
|
Cardone Giovanni, de Castro Paulo, Lindblad Joakim
|
Tutorial
|
|
Object tracking, Particle tracking
|
|
| |
1501
|
|
Miura Kota, Cardone Giovanni
|
Tutorial
|
|
Object tracking, Particle tracking
|
|
| |
1499
|
|
Tosi Sébastien
|
Tutorial
|
must know basics of ImageJ/FIJI
|
Image processing
|
Event
|
| |
1498
|
|
Guiet Romain, Tosi Sébastien
|
Tutorial
|
must know basics of ImageJ/FIJI
|
Image processing
|
/neubias-ts1
|
| |
1500
|
|
Guiet Romain
|
|
must know basics of ImageJ/FIJI
|
|
/neubias-ts1
|
| |
1497
|
|
Kota Miura
|
Tutorial
|
none
|
Bioimage informatics, Image analysis
|
|
| |
1494
|
|
Jaroslav Icha, Christopher Schmied, Jaydeep Sidhaye, Pavel Tomancak, Stephan Preibisch, Caren Norden
|
|
|
|
|
| |
1451
|
|
Fabrice Cordelières, Chong Zhang
|
|
ImageJ macro knowledge
|
Colocalisation analysis, Object-based colocalisation
|
/neubias-ts1
|
| |
1446
|
|
Arne Seitz, Romain Guiet, Olivier Burri from BIOP EPFL
|
|
none.
|
Image analysis, Image processing, Light microscopy, High content screening
|
|
| |
1420
|
synchrotron
|
Tom de Vries, Chong Zhang
|
video tutorial
|
|
Image segmentation, Phase contrast microscopy, Contrast enhancement, Watershed segmentation
|
|
| |
1373
|
|
Robert Haase, Kouichi C. Nakamura, Jan Eglinger, ImageJ community
|
|
|
|
|
| |
1372
|
|
Robert Haase
|
Tutorial
|
|
|
|
| |
1365
|
|
|
|
|
|
|
| |
1366
|
|
Fabrice Cordeliéres, Ofra Golani
|
Tutorial, Workshop material
|
must know basics of ImageJ/FIJI
|
ImageJ Macros
|
NEUBIAS TS1 Facility Staff School - Barcelona 2016
|
| |
45
|
|
|
|
|
|
|
| |
70
|
|
|
|
|
|
|
| |
55
|
|
|
|
|
|
|
| |
6
|
|
|
|
|
|
|
