Fractal: A framework for processing OME-Zarr high content imaging data

Fractal is a framework to process high-content imaging data at scale and prepare it for interactive visualization. Fractal provides distributed workflows that convert TBs of image data into OME-Zarr files. The platform then processes the 3D image data by applying tasks like illumination correction, maximum intensity projection, 3D segmentation using cellpose and measurements using napari workflows. The pyramidal OME-Zarr files enable interactive visualization in the napari viewer.
These slides are from an early demo of Fractal in November 2022

Tool(s) used for training
Joel Lüthi
Gustavo de Medeiros
Lucas Pelkmans
Prisca Liberali
Trainer(s)/ presenter(s)
Joel Lüthi
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