3D object based colocalisation

A user comes to the Facility: “I’ve got a set of 2 channels 3D images where objects are overlapping. I think the overlap might not be the same from object to object. I would like to quantify the physical overlap and get a map of quantifications”. Your mission: write the appropriate macro, knowing a user might always change her/his mind, and ask for more… Ready to take on the challenge ?

Tool(s) used for training
Fabrice Cordelières
Chong Zhang
Trainer(s)/ presenter(s)
Fabrice Cordelières
Chong Zhang

ImageJ macro knowledge

Content type
Expected duration