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Name Category Image requires Type interaction level License/Openness has function has topic
Multiview-stitcher Software Component Semi-automated Free and open source Image stitching Multimodal imaging
muscle cross-sections Dataset mosaick
muscleQNT: Muscle fiber counting Software Mahotas, OpenCV, SciPy, PIL, NumPy, Python Collection Automated Free and open source Cell segmentation, Object counting, Shape features Fluorescence microscopy
Mycosis Lung Quantifier Software need a thumbnail Component Automated I do not know
Myotracker Software Fiji Workflow Semi-automated Free and open source Bright field microscopy
MyTardis Software need a thumbnail Collection Manual Free and open source Data handling Data sharing
Name Landmarks and Register Software need a thumbnail ImageJ Component Automated I do not know
nanoFeatures Software GUI first tab to browse and input files, select input type and check extra filters if needed. Matlab Image Processing Toolbox, Matlab Computer Vision System Toolbox, MATLAB Component Semi-automated Free and open source Operation, Analysis, Image analysis, Image feature detection, Single molecule localisation, Object feature extraction, Shape features, Clustering Bioimage informatics, Imaging, Microscopy, Super-resolution microscopy, Single molecule localization microscopy, Machine learning, Unsupervised learning
NanoJ Software ImageJ Collection Semi-automated Free and open source Image registration, Image analysis, Image processing, Image correction Live sample imaging, Fluorescence microscopy, Super-resolution microscopy
Nanotomy: Large-scale electron microscopy (EM) datasets Dataset nanoscopy
Napari image viewer Software Component Manual Free and open source Visualisation, Image visualisation, Volume rendering Bioimage informatics, Imaging
napari-lattice Software Napari image viewer, Python Component Manual, Semi-automated Free and open source Image deconvolution, Geometrical transformation, Image crop Bioimage informatics, Light-sheet microscopy
napari-pyclesperanto-assistant Software Collection, Component Free and open source Image analysis Bioimage informatics
Napari: n-dimensional Python image viewer Training Material
NBLAST Software NeuroAnatomy Toolbox Component Semi-automated Free and open source Analysis, Clustering Statistics
nctuTW Software nctuTW_results_example Vaa3D Component Automated, Semi-automated Free and open source Filament tracing, Neuron image analysis, Closing, Skeletonisation Confocal microscopy
nd-safir Software Component Automated Commercial, Free but not open source Image denoising Widefield microscopy, Fluorescence microscopy, Confocal fluorescence microscopy
NDPI Export Regions Tool Software imagej toolset to export regions from ndpi and ndpa-files ImageJ Workflow Automated Free and open source Data handling Digital histology
NDPItools Software need a thumbnail ImageJ Component Semi-automated Free and open source Image generation Digital histology
ndpi_extractroi Software OpenSlide Component Semi-automated Free and open source Image generation Digital histology