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Name Category Image requires Type interaction level License/Openness has function has topic
Aivia - Aivia Cloud - Aivia Web Software Collection, Workflow Automated, Manual, Semi-automated Commercial Analysis, Frequency analysis, Image analysis, Colocalisation analysis, Object-based colocalisation, Pixel-based colocalisation, Filament tracing, Image feature detection, Image segmentation, Cell segmentation, Pixel classification, Neuron image analysis, Object classification, Object counting, Texture extraction, Object tracking, Cell tracking, Particle tracking, Annotation, Classification, Editing, Image deconvolution, Visualisation, Image visualisation, Volume rendering, Plotting Machine learning
Automated workflow for parallel Multiview Reconstruction Software Fiji, Snakemake Workflow Automated Free and open source Image registration, Image deconvolution, Selective plane illumination microscopy reconstruction, Image processing, Drift correction Light-sheet microscopy
AutoQuant Software Image restoration with AutoQuant Collection Automated I do not know Image deconvolution Fluorescence microscopy
BigStitcher Software ImageJ, ImgLib2, BigDataViewer Collection Automated, Manual, Semi-automated Free and open source Image registration, Affine registration, Rigid registration, Data handling, Affine transformation, Image deconvolution, Image stitching, Selective plane illumination microscopy reconstruction, Visualisation
CAREless Software need a thumbnail Workflow Automated, Semi-automated Free and open source Image deconvolution, Image denoising, Image enhancement Microscopy, Machine learning
clij - GPU-acceleration for ImageJ Software Fiji, Icy, MATLAB Collection Automated Free and open source Spot detection, Image thresholding, Local thresholding, Object counting, Image deconvolution, Image denoising, Image projection, Affine transformation, Linear transformation, Rotation, Image crop, Smoothing, Closing, Dilation, Erosion, Opening, Volume rendering Bioimage informatics, Statistics
Color normalization of H&E stains Software MATLAB Component Semi-automated I do not know Image deconvolution Digital histology
CSBDeep a toolbox for Content-aware Image Restoration (CARE) in Fiji Software CARE Fiji Component Semi-automated Free and open source Image reconstruction, Image deconvolution, Image denoising, Image projection, Selective plane illumination microscopy reconstruction Light microscopy, Light-sheet microscopy
CSBDeep a toolbox for Content-aware Image Restoration (CARE) in Knime Software KNIME Collection, Component Semi-automated Image deconvolution, Image denoising Light microscopy, Light-sheet microscopy
DeconvolutionLab2 Software ImageJ Collection, Component Automated Free and open source Image deconvolution Microscopy
Fast Multilevel Thresholded-Landweber Deconvolution Algorithm Software MATLAB Component Automated Free and open source Image deconvolution
Huygens Software Collection Manual, Semi-automated Commercial Colocalisation analysis, Object-based colocalisation, Single molecule localisation, Object tracking, Image deconvolution, Chromatic aberration correction, Image visualisation, Volume rendering Light-sheet microscopy, Widefield microscopy, Fluorescence microscopy, Confocal fluorescence microscopy, Super-resolution microscopy
ImmunoRatio Software ImageJ, Colour Deconvolution Workflow Automated I do not know Image deconvolution Digital histology
Iterative Deconvolve 3D Software need a thumbnail ImageJ Component Automated Free and open source Image deconvolution Bioimage informatics
Multiview Reconstruction Software need a thumbnail BigDataViewer, ImageJ, ImgLib2 Collection Manual, Semi-automated Free and open source Image registration, Affine registration, Rigid registration, Affine transformation, Chromatic aberration correction, Drift correction, Image deconvolution, Selective plane illumination microscopy reconstruction, Visualisation Light-sheet microscopy
ORION Software ORION_example_result Collection Automated Free and open source Filament tracing, Neuron image analysis, Image enhancement, Image deconvolution Fluorescence microscopy, Confocal microscopy, Multi-photon microscopy
Parallel Iterative Deconvolution Software need a thumbnail ImageJ, Huygens, PSF Generator Component I do not know Free and open source Image deconvolution Bioimage informatics
Parallel Spectral Deconvolution Software need a thumbnail ImageJ Component Automated Free and open source Image deconvolution Bioimage informatics
Real-time multi-view deconvolution Software need a thumbnail Component Manual Free and open source Image deconvolution, Selective plane illumination microscopy reconstruction
restoreTools Software need a thumbnail MATLAB Collection Automated Free and open source Image reconstruction, Image deconvolution, Image correction Bioimage informatics