CSBDeep a toolbox for Content-aware Image Restoration (CARE) in Fiji

CARE
Type
Component
Author
Weigert, Martin
Schmidt, Uwe orcid.org/0000-0003-1649-2057
Jug, Florian orcid.org/0000-0002-8499-5812
Requires
Fiji
Execution Platform
Linux
Mac
Windows
Implementation Type
plugin
Supported image dimension
2D
3D
multi-channel
Interaction Level
Semi-automated
License/Openness
Free and open source
License
BSD 3-Clause License
Description

Deep learning for fluorescence image restoration (denoising, deconvolution). Requires training on your data set but the procedure is described.

has function
Image reconstruction
Image deconvolution
Image denoising
Image projection
Selective plane illumination microscopy reconstruction
has topic
Light microscopy
Light-sheet microscopy
Entry Curator
Perrine
Download Page
CSBDeep in Fiji
Documentation Link
general website for csbdeep
Reference Publication Link
Content-Aware Image Restoration: Pushing the Limits of Fluorescence Microscopy
DOI link
10.1038/s41592-018-0216-7