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Name Sort descending Category Image requires Type interaction level License/Openness has function has topic
BBBC002v1 Dataset Drosophila Kc167 cells
EBImage Software EBImage Bioconductor Collection I do not know Free and open source Image segmentation, Geometrical transformation, Morphological operation Bioimage informatics, High content screening
(Z,T) Hyperstack Stitcher Software ImageJ Component Automated I do not know Alignment construction, Image stitching Microscopy
(Z,T,C) Stitcher Software ImageJ Component Automated I do not know Image stitching Microscopy
2-D Colocalisation in Cells Software CellProfiler, CellProfiler Workflow Automated Free and open source Colocalisation analysis, Object-based colocalisation
2D and 3D mitochondrial shape analysis and network properties Software ImagePro Workflow Automated I do not know Confocal fluorescence microscopy
2D and 3D tracking based on global cost function optimization Software ImageJ, MTrackJ, ImageScience.jar, Jama, Tracking2.0 Workflow Automated Free and open source Object tracking, Particle tracking, Trajectory analysis
2D brain slice region annotation: SliceMap Software Example: SliceMaps brain region segmentation Workflow Semi-automated Free and open source Image registration, Image segmentation Widefield microscopy
2D bright field yeast cell images with ground truth annotations Dataset 2D bright field yeast cell images
2D cell tracking and analysis of morphological dynamics Software ImageJ, QuimP Workflow Semi-automated I do not know Cell segmentation, Active contours, Cell tracking
2D Gaussian fitting macro (Fiji/ImageJ) for multiple signals. Software ImageJ, Fiji Workflow Semi-automated Free and open source Image analysis, Single molecule localisation Bioimage informatics, Single molecule localization microscopy
2D image processing and Data analysis with Matlab Training Material
2D spots counting using KNIME Software KNIME Image Processing and Analysis Workflow Automated Free and open source Spot detection
2D tracking using KNIME and Fiji Software KNIME Image Processing and Analysis, Fiji Workflow Semi-automated Free and open source Object tracking
2D-3D distributed parallel region competition segmentation Software need a thumbnail Component Automated I do not know
3-D Density Kernel Estimation Software Jupyter notebook, Python, VIGRA, scikit-learn (sklearn), scikit-image Workflow Manual Free and open source Pixel classification, Prediction and recognition, Object counting Confocal microscopy, Machine learning
3D Active Meshes Software Active Contours, Level Sets Component Automated I do not know
3D affine transformation based on paired points Software Fiji Component Automated Free and open source Affine transformation, Linear transformation
3D Area Software need a thumbnail Processing Component Automated I do not know
3D cell tracking and quantification of shape changes Software need a thumbnail MATLAB Workflow Automated I do not know Cell tracking