EBImage provides general purpose functionality for image processing and analysis. In the context of (high-throughput) microscopy-based cellular assays, EBImage offers tools to segment cells and extract quantitative cellular descriptors. This allows the automation of such tasks using the R programming language and facilitates the use of other tools in the R environment for signal processing, statistical modeling, machine learning and visualization with image data.
EBImage is available through the Bioconductor software project (www.bioconductor.org). Strengths Lightweight Suitable for automated, scripted analyses All functions are documented with examples Modular links to R and Bioconductor software, notably imageHTS and cellHTS2 Community support via the Bioconductor mailing list Reproducible (image) analysis using the Sweave report-writing system