The NEUBIAS Academy at home about CLIJ2 gives an introduction to accelerated image processing using Graphics Processing Units (GPUs) in ImageJ/Fiji. Core concepts are explained as well as usage of the tools with the ImageJ Macro recorder and auto-completion in Fijis script editor. Furthermore, an outlook is provided of how the CLIJ project will develop in the coming years to provide long-term maintained access to GPU-acceleration in the Bio-Image Analysis context.
A workflow is a set of components assembled in some specific order to
- Measure and estimate some numerical parameters of the biological system or
for addressing a biological question. Workflows can be a combination of components from the same or different software packages using several scripts and manual steps.
The one-day course is focused on processing microscopy images showing cells and nuclei. We will dive through segmenting objects, measuring their properties, managing measurements in tables and plotting results.
A lecture about challenges and solutions for GPU-accelerating bio-image analysis workflows and running them in the cloud.