This session will focus on the exploration of MATLAB functions and methodologies for image processing. We will cover aspects like importing images and metadata, as well as saving processed images and csv data files. Techniques such as image filtering, segmentation and morphological operations will be addressed. To promote a comparison with ImageJ, a simple workflow for object counting and properties extraction will be coded, using as input data the Embryos sample image. To exemplify the potential benefits of MATLAB’s integrative environment, we will plot the extracted data and calculate a regression (using MATLAB’s cftool and/or other functions).

Tool(s) used for training
Author(s)
de Castro Aguiar Paulo
Cardone Giovanni
Lindblad Joakim
Prerequisites

Must understand basics of Matlab as in the TM "Introduction to Matlab"

Topics covered
Format
Content type
Expected duration
2hours