2D tracking using KNIME and Fiji

Type
Workflow
Author
Juergen Reymann
Requires
KNIME Image Processing and Analysis
Fiji
Execution Platform
Linux
Mac
Windows
Programming Language
KNIME Workflow
Supported image dimension
2D
time-series
Interaction Level
Semi-automated
License/Openness
Free and open source
Description

This simple KNIME workflow solution tracks 2D objects/cells in time series. After a few intensity based preprocessing steps, objects/cells are segmented first, then it uses Fiji TrackMate LAP method for the tracking task.

Documentation starts from p23 of the linked PDF. 

Example Image: mitocheck_small.tif (2.9M)

has function
Object tracking
Entry Curator
czhang
Post date
12/09/2014 - 12:47
Last modified
05/14/2018 - 23:16
Download Page
Session4_Tracking
Documentation Link
Chapter 3 2D+time tracking