|
1656
|
Image analysis
|
Bioimage informatics
|
|
|
1655
|
Image registration, Image thresholding, Object counting, Object detection
|
Imaging, In-vivo imaging, Light microscopy, Fluorescence microscopy
|
|
|
1653
|
Analysis, Cell segmentation, Clustering
|
Digital histology, Fluorescence microscopy
|
|
|
1652
|
Image generation
|
Digital histology
|
ImageJ
|
|
1651
|
Image generation
|
Digital histology
|
OpenSlide
|
|
1650
|
Image classification
|
Bioimage informatics
|
|
|
1649
|
Image classification, Object classification, Annotation, Image annotation
|
Bioimage informatics
|
ImageJ, Fiji
|
|
1648
|
Clustering
|
Fluorescence microscopy
|
ImageJ
|
|
1647
|
Classification, Clustering, Visualisation
|
High content screening, Statistics
|
|
|
1646
|
Data handling
|
Data sharing, Multimodal imaging
|
|
|
1645
|
Visualisation, Image visualisation
|
Data sharing, Correlative Light and Electron Microscopy, Electron microscopy, Light microscopy, Multimodal imaging
|
Fiji, BigDataViewer
|
|
1642
|
Image denoising
|
Widefield microscopy, Fluorescence microscopy, Confocal fluorescence microscopy
|
|
|
1641
|
Annotation, Image annotation
|
Bioimage informatics
|
ImageJ, Fiji
|
|
1640
|
|
|
|
|
1639
|
Image deconvolution, Image denoising, Image enhancement
|
Microscopy, Machine learning
|
|
|
1637
|
Image analysis, Image segmentation, Data handling, Image visualisation
|
Bioimage informatics
|
Matlab Image Processing Toolbox, MATLAB, MATLAB Statistics toolbox
|
|
1636
|
Interactive segmentation, Pixel classification, Texture extraction, Clustering
|
Bioimage informatics, Machine learning
|
MATLAB
|
|
1635
|
Image classification, Cell segmentation, Image denoising
|
Machine learning
|
|
|
1634
|
Pixel classification
|
Machine learning, Supervised learning
|
|
|
1633
|
|
|
|
|
1632
|
Image classification
|
Machine learning
|
|
|
1631
|
Image segmentation, Cell segmentation, Model-based segmentation
|
Light microscopy, Light-sheet microscopy, Fluorescence microscopy, Multi-photon microscopy, Machine learning
|
ImageJ
|
|
1630
|
Cell segmentation
|
Machine learning
|
|
|
1629
|
Cell segmentation, Image denoising
|
Machine learning
|
ImageJ, Tensorflow
|
|
1628
|
Optimisation or refinement
|
Bioimage informatics
|
MATLAB
|
|
1627
|
Annotation, Validation, Visualisation
|
Bioimage informatics, Data sharing
|
MorphoNet
|
|
1626
|
Annotation, Image annotation, Landmark assignment, Visualisation, Image visualisation, Surface rendering
|
Bioimage informatics, Data sharing
|
|
|
1625
|
Image segmentation, Cell segmentation, Object classification, Annotation, Image annotation
|
Microscopy, Electron microscopy, Focused ion beam scanning electron microscopy, Serial block-face scanning electron microscopy
|
|
|
1623
|
Filament tracing, Neuron image analysis
|
|
Vaa3D
|
|
1622
|
Filament tracing, Local thresholding, Skeletonisation
|
|
ImageJ
|
|
1621
|
Filament tracing, Feature enhancement, Skeletonisation
|
|
ImageJ, Tubeness
|
|
1620
|
Filament tracing, Neuron image analysis
|
|
Vaa3D, MOST-Raytracer
|
|
1619
|
|
|
Vaa3D
|
|
1618
|
Filament tracing, Neuron image analysis
|
|
|
|
1617
|
Filament tracing, Neuron image analysis
|
|
Vaa3D, APP2
|
|
1616
|
Object tracking
|
Machine learning
|
OpenCV, scikit-image, Tensorflow, Keras
|
|
1615
|
Object tracking
|
|
GNU Octave
|
|
1614
|
Object tracking
|
|
ImageJ
|
|
1612
|
|
|
|
|
1613
|
Particle tracking
|
|
TrackMate, pyimagej
|
|
1611
|
Particle tracking
|
|
ImageJ, FeatureJ Laplacian
|
|
1610
|
Pixel classification
|
Machine learning
|
ilastik
|
|
1609
|
|
|
|
|
1608
|
|
Machine learning
|
scikit-image, numpy
|
|
1607
|
|
Machine learning
|
scikit-image, scipy, numpy, matplotlib, Libtiff, scikit-learn (sklearn)
|
|
1605
|
|
|
|
|
1606
|
|
|
ImageJ, FeatureJ Laplacian, ImageJ Built-in Macro Functions, FeatureJ Hessian
|
|
1604
|
Spot detection
|
|
Icy
|
|
1603
|
Spot detection, Distance transform
|
|
ImageJ, FeatureJ Laplacian, ImageJ Built-in Macro Functions
|
|
1600
|
Cell tracking
|
Bioimage informatics, Live sample imaging, Light-sheet microscopy
|
|
|
1599
|
Optimisation or refinement
|
Microscopy
|
|
|
1598
|
Image segmentation
|
Bioimage informatics
|
Fiji, MorphoLibJ
|
|
1597
|
|
|
Amira
|
|
1596
|
Alignment construction, Image registration, Image analysis, Image processing
|
Multimodal imaging
|
|
|
1595
|
Image analysis, Plotting
|
Fluorescence correlative spectroscopy, Image correlation spectroscopy
|
|
|
357
|
Image correction
|
|
ImageJ
|
|
1594
|
Visualisation, Image visualisation, Volume rendering
|
Bioimage informatics, Imaging
|
|
|
1593
|
Image analysis, Cell segmentation, Cell tracking, Plotting
|
Live sample imaging, In-vitro imaging, Widefield microscopy, Transmission light microscopy, Phase contrast microscopy
|
StackReg, TurboReg
|
|
1592
|
Frequency analysis, Image feature detection, Synthetic image generation, Image processing
|
Bioimage informatics
|
MATLAB
|
|
1591
|
|
|
|
|
1590
|
Particle tracking, Trajectory analysis
|
Bioimage informatics
|
Spot Detector (Icy), Spot detection utilities, Track Manager
|
|
1589
|
Object classification
|
Bioimage informatics
|
|
|
1588
|
Alignment construction, Image registration, Affine registration, Rigid registration, Deformable registration, Feature-based registration, Frequency analysis
|
Multimodal imaging
|
Matlab Image Processing Toolbox, Matlab Computer Vision System Toolbox
|
|
1587
|
Conversion
|
Bioimage informatics
|
|
|
1586
|
Image processing, Visualisation
|
Machine learning, Statistics
|
|
|
1585
|
Image segmentation
|
Bioimage informatics
|
ImageJ
|
|
1584
|
Active contours
|
Bioimage informatics
|
ImageJ
|
|
1583
|
Image projection
|
Microscopy
|
|
|
1582
|
Image projection
|
Microscopy
|
|
|
1578
|
Cell segmentation, Cell tracking, Morphological operation
|
Fluorescence microscopy, Phase contrast microscopy
|
Tensorflow, Keras
|
|
1572
|
Image feature detection, Image segmentation, Interactive segmentation, Object feature extraction, Shape features, Visualisation, Image visualisation, Volume rendering
|
Digital histology, Electron microscopy, Light microscopy, Multimodal imaging, Machine learning
|
|
|
1570
|
Data handling, Visualisation, Image visualisation
|
Data sharing, Electron microscopy, Light-sheet microscopy
|
|
|
1568
|
|
|
|
|
1566
|
|
|
|
|
1562
|
|
|
Fiji
|
|
1561
|
Image annotation, Data handling
|
Data sharing, Machine learning
|
|
|
1560
|
Image analysis, Illumination correction
|
Bioimage informatics
|
ImageJ
|
|
1557
|
Object detection, Pattern recognition
|
Bioimage informatics, High content screening
|
Fiji
|
|
1556
|
Visualisation
|
Bioimage informatics
|
|
|
1555
|
Single molecule localisation, Visualisation
|
Bioimage informatics
|
Python 2.7
|
|
1553
|
Image analysis, Filament tracing, Object tracking
|
Fluorescence microscopy
|
ImageJ, Fiji
|
|
1527
|
Image analysis, Image classification, Visualisation
|
High content screening, Statistics
|
|
|
1496
|
Annotation, Visualisation
|
Bioimage informatics
|
|
|
1493
|
|
|
ITK, CMake
|
|
1491
|
|
|
|
|
1492
|
Image registration, Image deconvolution, Selective plane illumination microscopy reconstruction, Image processing, Drift correction
|
Light-sheet microscopy
|
Fiji, Snakemake
|
|
1490
|
Cell segmentation
|
Bioimage informatics
|
Python
|
|
1489
|
Image registration, Feature-based registration
|
Fluorescence microscopy
|
|
|
1488
|
Pixel classification
|
Machine learning
|
ilastik, scipy, numpy, scikit-image
|
|
1486
|
Image segmentation, Object detection
|
Phase contrast microscopy
|
Tensorflow, Keras, Python 3.6
|
|
1487
|
Image segmentation, Object detection
|
Machine learning
|
|
|
1485
|
Landmark assignment
|
Machine learning
|
scikit-learn (sklearn), Python 3.6, sumproduct
|
|
1483
|
|
Machine learning
|
Python
|
|
1484
|
Landmark assignment
|
Computerized tomography
|
scikit-learn (sklearn), Python 3.6, sumproduct
|
|
1482
|
Landmark assignment
|
Machine learning
|
scikit-learn (sklearn), Python 3.6
|
|
1481
|
Landmark assignment
|
Machine learning
|
scikit-learn (sklearn), Python 3.6
|
|
1480
|
Landmark assignment
|
Machine learning
|
Python, scikit-learn (sklearn)
|
|
1479
|
Landmark assignment
|
|
scikit-learn (sklearn), Python 3.6
|
|
1478
|
|
|
|
|
1476
|
|
Machine learning
|
Python
|
|
1477
|
Pixel classification, Smoothing
|
|
PyTorch, pydensecrf
|
|
1475
|
|
Bioimage informatics
|
ImageJ, Fiji
|
|
1474
|
Image registration, Image analysis, Shape features
|
|
Python
|
|
1473
|
Image registration
|
Multimodal imaging
|
|
|
1471
|
Image segmentation
|
Imaging
|
ImageJ
|
|
1470
|
Image segmentation
|
Machine learning
|
Python
|
|
1468
|
|
|
|
|
1469
|
Image generation
|
|
ITK, CMake
|
|
1467
|
Image segmentation
|
|
CellProfiler
|
|
1466
|
Object tracking
|
|
ImageJ
|
|
1464
|
Morphological operation
|
|
mcib3d library, ImageJ
|
|
1463
|
Image convolution, Morphological operation
|
|
ImageJ, VIB Protocol
|
|
1465
|
Filament tracing, Neuron image analysis, Feature enhancement
|
|
ImageJ
|
|
1462
|
Adaptative thresholding, Watershed segmentation, Object detection, Smoothing
|
|
scikit-image, scipy, numpy
|
|
1460
|
Image analysis
|
Bioimage informatics
|
Icy
|
|
1461
|
Spot detection
|
|
|
|
1457
|
Image convolution
|
|
VIB Protocol
|
|
1458
|
Spot detection
|
|
ImageJ, FeatureJ Laplacian, Analyze Particles
|
|
1455
|
|
Bioimage informatics
|
ImageJ
|
|
1456
|
Spot detection
|
|
ImageJ, FeatureJ Laplacian, Find Maxima, ImageJ Built-in Macro Functions
|
|
1454
|
Image segmentation, Image thresholding
|
|
ImageJ
|
|
1453
|
Filament tracing, Smoothing, Skeletonisation
|
|
ImageJ
|
|
1452
|
Image generation, Synthetic image generation
|
Single molecule localization microscopy
|
|
|
1449
|
|
|
|
|
1450
|
Generation, Image generation, Image reconstruction
|
Microscopy, Light microscopy, Widefield microscopy, Phase contrast microscopy
|
NVidia CUDA 9
|
|
1447
|
|
|
|
|
1445
|
Analysis
|
|
|
|
1444
|
Object classification, Classification, Prediction and recognition
|
|
|
|
1443
|
Image analysis, Image processing
|
Fluorescence microscopy, Super-resolution microscopy
|
ImageJ
|
|
1442
|
Image processing, Image correction
|
Fluorescence microscopy, Super-resolution microscopy
|
ImageJ
|
|
1441
|
Image segmentation, Watershed segmentation, Smoothing
|
|
ImageJ
|
|
1440
|
Colocalisation analysis, Image segmentation, Morphological operation
|
|
ImageJ, ImageScience.jar
|
|
1439
|
Image convolution, Smoothing
|
|
ImageJ
|
|
1437
|
Watershed segmentation
|
|
|
|
1438
|
Image segmentation, Watershed segmentation
|
|
ImageJ
|
|
1436
|
|
|
|
|
1435
|
|
|
|
|
1433
|
|
|
|
|
1432
|
Image analysis
|
Bioimage informatics, Tomography, Machine learning
|
|
|
1431
|
Classification
|
Digital histology, High content screening, Bright field microscopy
|
R
|
|
1430
|
Spot detection, Image thresholding, Local thresholding, Object counting, Image deconvolution, Image denoising, Image projection, Affine transformation, Linear transformation, Rotation, Image crop, Smoothing, Closing, Dilation, Erosion, Opening, Volume rendering
|
Bioimage informatics, Statistics
|
Fiji
|
|
1429
|
Chromatic aberration correction
|
Fluorescence microscopy
|
|
|
1428
|
|
Fluorescence microscopy
|
|
|
1427
|
|
Fluorescence microscopy
|
ImageJ
|
|
1425
|
Image analysis, Image visualisation
|
|
ImageJ, Fiji
|
|
1424
|
|
Fluorescence microscopy
|
ImageJ
|
|
1423
|
Analysis, Shape features
|
|
MeVisLab
|
|
1422
|
Skeletonisation
|
|
ImageJ
|
|
1421
|
Image registration, Image segmentation, Morphological operation, Visualisation, Volume rendering
|
Magnetic resonance imaging, Tomography, Computerized tomography
|
|
|
1419
|
Visualisation
|
Light-sheet microscopy
|
OpenCL
|
|
1418
|
Image segmentation, Image visualisation
|
Electron microscopy
|
|
|
1417
|
Image registration, Affine registration, Rigid registration, Deformable registration, Visualisation
|
Multimodal imaging
|
elastix
|
|
1416
|
Colocalisation analysis, Pixel-based colocalisation
|
Bioimage informatics, Confocal fluorescence microscopy, Super-resolution microscopy
|
Icy
|
|
1415
|
Image segmentation, Cell segmentation, Interactive segmentation, Object feature extraction
|
Bioimage informatics
|
|
|
1414
|
Analysis, Image segmentation, Cell segmentation
|
Digital histology, Statistics
|
|
|
1413
|
|
|
|
|
1412
|
Image segmentation, Interactive segmentation
|
Bioimage informatics
|
Python 3.6
|
|
1411
|
Image deconvolution
|
Microscopy
|
ImageJ
|
|
1409
|
Spot detection
|
|
ImageJ
|
|
1408
|
Colocalisation analysis, Spot detection
|
Bioimage informatics
|
ImageJ, Jama
|
|
1406
|
Particle tracking
|
Bioimage informatics
|
Fiji
|
|
1404
|
|
|
Fiji
|
|
1405
|
Spot detection, Morphological operation
|
Bioimage informatics
|
Fiji, MiToBo
|
|
1403
|
Cell segmentation, Editing
|
Fluorescence microscopy, Confocal microscopy
|
|
|
1402
|
Image visualisation, Volume rendering
|
Confocal microscopy
|
|
|
1400
|
Image visualisation, Volume rendering
|
|
ImageJ
|
|
1399
|
Image segmentation, Image annotation, Image visualisation
|
Machine learning
|
ImageJ
|
|
1398
|
Image visualisation
|
|
ImageJ
|
|
1397
|
Image analysis
|
Super-resolution microscopy, Single molecule localization microscopy, Statistics
|
ImageJ, NanoJ
|
|
1395
|
Image analysis, Pattern recognition, Image validation
|
|
ImageJ
|
|
1393
|
|
|
|
|
1394
|
|
|
|
|
1392
|
Filament tracing, Neuron image analysis, Image reconstruction, Image visualisation, Slice rendering, Surface rendering, Volume rendering
|
Electron microscopy, In-silico reconstruction
|
JavaFX, Maven
|
|
1391
|
Visualisation, Image visualisation, Plotting
|
High content screening, Statistics
|
|
|
1390
|
Analysis, Clustering, Visualisation
|
Statistics
|
Paraview
|
|
1389
|
Visualisation, Image visualisation, Volume rendering
|
|
|
|
1388
|
|
|
|
|
1387
|
|
|
|
|
1386
|
Image visualisation, Surface rendering, Volume rendering
|
Bioimage informatics
|
|
|
1385
|
Analysis, Object classification, Image annotation, Image visualisation, Volume rendering
|
Electron microscopy, Tomography
|
Blender
|
|
1382
|
Image feature detection, Edge detection, Object classification, Object detection, Object feature extraction, Image annotation, Pattern recognition
|
Bioimage informatics, High content screening, In-vivo imaging, Microscopy, Light microscopy, Widefield microscopy, Bright field microscopy
|
|
|
1381
|
Spot detection
|
Microscopy
|
ImageJ, FeatureJ Laplacian, Find Maxima
|
|
1380
|
Image processing
|
Bioimage informatics
|
ImageJ, Fiji, IntelliJ IDEA, Fiji
|
|
1379
|
|
|
|
|
1377
|
|
Bioimage informatics
|
|
|
1378
|
|
|
|
|
1376
|
Analysis, Prediction and recognition, Pattern recognition
|
Machine learning
|
Python, numpy, matplotlib
|
|
1375
|
Pixel classification, Prediction and recognition, Object counting
|
Confocal microscopy, Machine learning
|
Jupyter notebook, Python, VIGRA, scikit-learn (sklearn), scikit-image
|
|
1374
|
Image analysis
|
Light-sheet microscopy
|
|
|
1371
|
Image projection
|
Microscopy, Fluorescence microscopy
|
Fiji
|
|
1370
|
Cell segmentation, Interactive segmentation, Watershed segmentation, Spot detection
|
Fluorescence microscopy
|
Fiji
|
|
1368
|
|
|
|
|
1369
|
|
|
|
|
1364
|
|
|
|
|
1367
|
Image analysis, Image feature detection
|
|
scipy, PIL, Python, Jupyter, Jupyter notebook
|
|
1363
|
Image analysis, Single molecule localisation
|
Bioimage informatics, Single molecule localization microscopy
|
ImageJ, Fiji
|
|
1360
|
Cell tracking, Particle tracking
|
Live sample imaging
|
MATLAB
|
|
1359
|
Analysis, Frequency analysis
|
Fluorescence microscopy, Fluctuation based microscopy, Fluorescence correlative spectroscopy, Point-scanning microscopy, Statistics
|
|
|
1358
|
Trajectory analysis
|
Live sample imaging, Statistics
|
MATLAB Curve Fitting Toolbox, MATLAB
|
|
1357
|
Frequency analysis, Analysis
|
Microscopy, Fluorescence microscopy, Spectroscopy
|
|
|
1356
|
Image classification
|
Machine learning
|
|
|
1355
|
Image registration, Deformable registration
|
Magnetic resonance imaging
|
FMRIB's Linear Image Registration Tool FLIRT
|
|
1354
|
Image registration, Linear transformation
|
Magnetic resonance imaging
|
|
|
1353
|
Spot detection, Chromatic aberration correction, Geometric distortion correction, Illumination correction
|
High content screening, Fluorescence microscopy, Confocal fluorescence microscopy
|
|
|
1352
|
Image correction
|
Digital histology, Widefield microscopy
|
|
|
1351
|
Single molecule localisation
|
Super-resolution microscopy, Single molecule localization microscopy
|
|
|
1350
|
Single molecule localisation, Image deconvolution
|
Super-resolution microscopy
|
ImageJ
|
|
1347
|
|
|
|
|
1348
|
|
|
|
|
1349
|
Filament tracing, Image thresholding, Neuron image analysis, Distance transform
|
|
scipy, numpy, Python, Libtiff, simpleITK, cython
|
|
1345
|
|
|
|
|
1346
|
Image segmentation, Image feature detection
|
Digital histology, High content screening, Electron microscopy, Light microscopy, Fluorescence microscopy, Machine learning
|
ZEN Blue
|
|
1344
|
|
|
|
|
1343
|
Data handling
|
Bioimage informatics
|
OMERO.server
|
|
1342
|
Image analysis, Data handling
|
Data sharing
|
|
|
1341
|
Data handling, Image annotation
|
Bioimage informatics, Data sharing
|
LOCI Bioformats plugin
|
|
1340
|
Montage
|
Data sharing
|
Fiji
|
|
1339
|
Object counting, Analysis
|
High content screening, Fluorescence microscopy
|
EBImage, rOMERO-gateway
|
|
1338
|
Cell segmentation, Object classification, Object counting
|
Fluorescence microscopy
|
CellProfiler
|
|
1337
|
Object classification, Analysis
|
Bioimage informatics, Fluorescence microscopy
|
Cell or particle counting and scoring the percentage of stained objects, idr-py
|
|
1336
|
Object detection, Object feature extraction, Analysis
|
High content screening, Fluorescence microscopy, Structured illumination microscopy
|
ImageJ, R Project for Statistical Computing, Maximum Entropy Threshold (ImageJ), Analyze Particles, OMERO.insight-ij client
|
|
1333
|
Alignment construction, Image registration, Affine registration, Rigid registration
|
Electron microscopy, Fluorescence microscopy
|
StackReg, TurboReg
|
|
1332
|
Single molecule localisation, Chromatic aberration correction, Drift correction
|
Super-resolution microscopy
|
ImageJ
|
|
1331
|
Analysis, Frequency analysis, Image analysis, Colocalisation analysis, Object-based colocalisation, Pixel-based colocalisation, Filament tracing, Image feature detection, Image segmentation, Cell segmentation, Pixel classification, Neuron image analysis, Object classification, Object counting, Texture extraction, Object tracking, Cell tracking, Particle tracking, Annotation, Classification, Editing, Image deconvolution, Visualisation, Image visualisation, Volume rendering, Plotting
|
Machine learning
|
|
|
1329
|
|
|
|
|
1326
|
|
|
ImageJ
|
|
1327
|
|
|
|
|
1323
|
|
|
|
|
1324
|
|
|
Python
|
|
1325
|
Image segmentation
|
Fluorescence microscopy, Machine learning
|
Python 2.7, Chainer, matplotlib, numpy, scikit-image
|
|
1319
|
|
|
|
|
1320
|
|
|
|
|
1321
|
|
|
|
|
1322
|
|
|
|
|
1318
|
|
|
|
|
1317
|
|
|
|
|
1316
|
Object tracking
|
|
Fiji
|
|
1315
|
Conversion, Image processing
|
|
|
|
1314
|
Spot detection, Image processing, Image convolution
|
|
ImageJ
|
|
1313
|
Image segmentation, Data handling, Image processing, Visualisation, Analysis
|
Bioimage informatics
|
Python
|
|
1312
|
|
|
|
|
1309
|
|
|
|
|
1310
|
|
|
JDK
|
|
1311
|
Object tracking, Particle tracking
|
Bioimage informatics
|
ImageJ, Jama
|
|
1308
|
|
|
|
|
1307
|
|
Light-sheet microscopy
|
|
|
1306
|
|
|
|
|
1305
|
|
|
|
|
1304
|
|
|
|
|
1303
|
|
|
|
|
1302
|
Cell segmentation
|
Phase contrast microscopy
|
Fiji
|
|
1301
|
Object counting, Spot detection
|
Machine learning
|
Fiji
|
|
1300
|
|
|
|
|
1299
|
|
|
|
|
1298
|
Image registration
|
|
ImageJ
|
|
1297
|
Analysis
|
Bioimage informatics, High content screening
|
|
|
1296
|
Image segmentation, Pattern recognition
|
Electron microscopy
|
ImageJ, OpenCV
|
|
1294
|
Image registration
|
|
ImageJ, OpenCV
|
|
1293
|
|
|
|
|
1292
|
Image denoising, Image deconvolution
|
Light microscopy, Light-sheet microscopy
|
KNIME
|
|
1291
|
Image reconstruction, Image deconvolution, Image denoising, Image projection, Selective plane illumination microscopy reconstruction
|
Light microscopy, Light-sheet microscopy
|
Fiji
|
|
1289
|
|
|
|
|
1290
|
|
|
|
|
1286
|
|
|
|
|
1287
|
|
|
|
|
1288
|
|
|
|
|
1284
|
|
|
|
|
1285
|
Image segmentation
|
Bioimage informatics
|
R Project for Statistical Computing
|
|
1280
|
Synthetic image generation, Plotting
|
In-silico reconstruction
|
|
|
1278
|
Image registration, Affine registration, Deformable registration
|
Multimodal imaging
|
|
|
1277
|
|
|
|
|
1276
|
Image segmentation, Image generation, Synthetic image generation
|
Imaging, Magnetic resonance imaging, Machine learning
|
Tensorflow
|
|
1271
|
Visualisation, Image visualisation
|
Bioimage informatics
|
Galaxy Workbench for Image Analysis, Galaxy Image Analysis Tools
|
|
1272
|
Image analysis
|
Bioimage informatics
|
Galaxy Workbench for Image Analysis, Docker ParaViewWeb
|
|
1270
|
|
Bioimage informatics
|
|
|
1225
|
Cell segmentation, Interactive segmentation, Object classification
|
Digital histology, Machine learning
|
|
|
1224
|
Image analysis, Filament tracing, Image segmentation, Object tracking, Drift correction, Image processing
|
Light microscopy, Bright field microscopy
|
ImageJ
|
|
1223
|
Image segmentation
|
|
ImageJ
|
|
1222
|
Cell segmentation, Object classification
|
Bright field microscopy, Machine learning
|
Micro-Manager
|
|
1221
|
Neuron image analysis, Dilation, Pixel-based colocalisation, Image feature detection, Colocalisation analysis
|
High content screening
|
ImageJ
|
|
1220
|
Image feature detection, Object tracking, Cell tracking, Image visualisation, Overlay, Plotting, Image annotation
|
Live sample imaging, Light-sheet microscopy
|
Fiji, BigDataViewer, TrackMate
|
|
1215
|
Image processing
|
|
|
|
1216
|
|
|
|
|
1217
|
Image analysis, Object tracking
|
Bioimage informatics
|
ImageJ
|
|
1218
|
Shape features, Cell tracking
|
Fluorescence microscopy, Confocal fluorescence microscopy
|
Gaussian blur in ImageJ, Otsu Thresholding, radial reslice, kymograph generation
|
|
1214
|
Data handling, Visualisation, Image visualisation, Volume rendering
|
Electron microscopy, Electron tomography, Tomography
|
|
|
1213
|
Active contours, Interactive segmentation, Object tracking, Isolated object tracking
|
Microscopy, Fluorescence microscopy
|
|
|
1211
|
Trajectory analysis
|
Fluorescence microscopy, Confocal fluorescence microscopy, Single molecule localization microscopy, Statistics
|
MATLAB
|
|
1206
|
|
|
|
|
1207
|
|
|
|
|
1208
|
|
|
|
|
1210
|
Image registration, Illumination correction, Image stitching
|
Light microscopy, Light-sheet microscopy
|
Fiji
|
|
1209
|
|
|
Fiji, Open Virtual stack in Fiji, TrakEM2, Create new TrakEM project in Fiji, import images into TrakEM, Linear Stack Alignment with SIFT (ImageJ)
|
|
1205
|
Image registration, Affine registration, Deformable registration
|
Imaging
|
Fiji, CMTK
|
|
1204
|
Warping, Image correction
|
Electron microscopy
|
Fiji
|
|
1201
|
Image classification, Image segmentation, Image enhancement, Image feature detection
|
Machine learning
|
|
|
1202
|
|
|
|
|
1203
|
Image enhancement
|
Electron microscopy, Machine learning
|
Tensorflow, Keras
|
|
1200
|
Image registration, Image analysis, Object-based colocalisation, Image segmentation, Image thresholding, Pixel classification, Smoothing, Image visualisation, Image feature detection, Colocalisation analysis
|
Bioimage informatics, Imaging, Magnetic resonance imaging, Computerized tomography
|
|
|
1199
|
Image segmentation, Object classification, Classification
|
Electron microscopy
|
VIGRA, Luigi
|
|
1198
|
Data handling
|
|
|
|
1197
|
Image registration, Affine registration, Rigid registration, Deformable registration, Image segmentation, Pixel classification, Illumination correction
|
Bioimage informatics
|
ITK
|
|
1196
|
Image registration, Affine registration, Deformable registration, Image analysis, Image classification, Image processing
|
Bioimage informatics, Statistics
|
|
|
1195
|
Image deconvolution, Selective plane illumination microscopy reconstruction
|
|
|
|
1194
|
Analysis, Clustering
|
Statistics
|
NeuroAnatomy Toolbox
|
|
1193
|
Alignment construction, Image registration, Rigid registration, Image stitching
|
|
|
|
1192
|
Visualisation, Analysis
|
Bioimage informatics, Microscopy, Statistics
|
|
|
1190
|
Image segmentation, Neuron image analysis, Visualisation, Volume rendering
|
Magnetic resonance imaging, Light-sheet microscopy
|
ITK
|
|
1186
|
|
|
|
|
1185
|
Visualisation
|
Bioimage informatics
|
|
|
1183
|
Volume rendering
|
Microscopy, Light microscopy, Light-sheet microscopy
|
ClearCL, ClearGL
|
|
1187
|
|
|
Vaa3D
|
|
1177
|
Plotting
|
Data sharing, Statistics
|
|
|
1180
|
Image processing
|
Bioimage informatics
|
OpenCL
|
|
1175
|
Filament tracing, Object tracking, Trajectory analysis
|
In-vitro imaging
|
Fiji
|
|
1178
|
Geometrical transformation, Warping, Geometric distortion correction
|
Confocal microscopy
|
Fiji, TrakEM2
|
|
1184
|
Image registration, Image segmentation
|
Widefield microscopy
|
|
|
1173
|
Image analysis
|
Imaging, Microscopy, Fluorescence microscopy, Spectroscopy
|
|
|
1174
|
Visualisation
|
Bioimage informatics
|
ClearGL
|
|
1176
|
Image registration, Affine registration, Rigid registration, Affine transformation, Chromatic aberration correction, Drift correction, Image deconvolution, Selective plane illumination microscopy reconstruction, Visualisation
|
Light-sheet microscopy
|
BigDataViewer, ImageJ, ImgLib2
|
|
1171
|
Image registration, Affine registration, Rigid registration, Visualisation, Image visualisation
|
Imaging, Light-sheet microscopy
|
ImgLib2
|
|
1179
|
Filament tracing, Neuron image analysis, Smoothing, Morphological operation, Skeletonisation, Image processing
|
Fluorescence microscopy
|
ImageJ
|
|
1170
|
|
|
|
|
1172
|
Image segmentation, Interactive segmentation, Pixel classification, Prediction and recognition, Image annotation
|
Electron microscopy, Scanning electron microscopy, Focused ion beam scanning electron microscopy, Serial block-face scanning electron microscopy, Electron tomography, Cryo electron tomography, Machine learning
|
|
|
1169
|
Image registration, Deformable registration, Warping
|
Correlative Light and Electron Microscopy, Electron microscopy
|
|
|
1168
|
Image registration, Affine registration, Rigid registration, Data handling, Affine transformation, Image deconvolution, Image stitching, Selective plane illumination microscopy reconstruction, Visualisation
|
|
ImageJ, ImgLib2, BigDataViewer
|
|
1167
|
|
Bioimage informatics
|
ImageJ
|
|
1166
|
Filament tracing, Image segmentation, Image enhancement
|
Imaging, Tomography
|
Vaa3D
|
|
1165
|
Filament tracing, Image segmentation, Adaptative thresholding, Neuron image analysis, Image enhancement, Distance transform
|
|
Vaa3D
|
|
1164
|
Image analysis, Image segmentation, Classification
|
Machine learning
|
OpenCV
|
|
1163
|
Image stitching
|
Bioimage informatics
|
OpenCV
|
|
1162
|
Image feature detection, Image thresholding, Watershed segmentation, Image processing, Geometrical transformation, Linear transformation, Smoothing, Morphological operation
|
Bioimage informatics
|
OpenCV
|
|
1161
|
Data handling
|
Bioimage informatics
|
OpenCV
|
|
1160
|
Classification, Clustering
|
Machine learning
|
OpenCV
|
|
1159
|
Image processing
|
Bioimage informatics
|
OpenCV
|
|
1158
|
Image reconstruction
|
Bioimage informatics
|
OpenCV
|
|
1157
|
Data handling
|
|
OpenCV
|
|
1156
|
Image enhancement, Feature enhancement
|
Bioimage informatics
|
OpenCV
|
|
1155
|
Feature-based registration, Image analysis, Image feature detection, Object feature extraction, Object tracking
|
Bioimage informatics
|
OpenCV
|
|
1152
|
|
|
|
|
1153
|
|
|
R
|
|
1150
|
|
|
ImageJ
|
|
1149
|
|
Digital histology
|
ImageJ
|
|
1148
|
Neuron image analysis, Closing, Skeletonisation
|
Confocal microscopy
|
Vaa3D
|
|
1147
|
Object detection, Spot detection
|
|
|
|
1144
|
Conversion
|
|
|
|
1141
|
Colocalisation analysis, Spot detection
|
Bioimage informatics
|
Fiji
|
|
1140
|
Image feature detection
|
Bioimage informatics
|
ImageJ
|
|
1136
|
Filament tracing, Neuron image analysis
|
Scanning electron microscopy, Confocal microscopy
|
|
|
1134
|
Cell segmentation
|
Digital histology
|
ImageJ
|
|
1132
|
Cell segmentation
|
Digital histology
|
MATLAB
|
|
1133
|
Filament tracing, Active contours, Neuron image analysis
|
|
ImageJ
|
|
1135
|
|
|
ImageJ
|
|
1130
|
|
|
|
|
1128
|
Image segmentation, Geometrical transformation, Morphological operation
|
Bioimage informatics, High content screening
|
Bioconductor
|
|
1129
|
|
High content screening
|
|
|
1126
|
Filament tracing, Image thresholding, Shape features
|
Digital histology
|
|
|
1127
|
Filament tracing, Neuron image analysis, Image enhancement, Image deconvolution
|
Fluorescence microscopy, Confocal microscopy, Multi-photon microscopy
|
|
|
1124
|
Image analysis, Optical flow analysis
|
Topic, Imaging, Fluorescence microscopy
|
Icy Matlab blocks
|
|
1125
|
Filament tracing, Neuron image analysis, Shape features
|
Imaging
|
|
|
1122
|
Image enhancement
|
|
ImageJ
|
|
1121
|
Image enhancement
|
|
ImageJ
|
|
1117
|
|
|
|
|
1119
|
Image enhancement
|
Imaging
|
ImageJ
|
|
1118
|
Filament tracing, Neuron image analysis, Image enhancement
|
Confocal microscopy, Multi-photon microscopy
|
Matlab compiler runtime
|
|
1079
|
Image segmentation, Image enhancement, Visualisation
|
Topic
|
|
|
1120
|
Filament tracing
|
|
ImageJ
|
|
1074
|
Shape features
|
Digital histology
|
Fiji
|
|
1073
|
Isolated object tracking
|
Light microscopy, Phase contrast microscopy
|
ImageJ, jMathPlot
|
|
1072
|
Filament tracing, Object detection, Pixel classification
|
|
ImageJ, Analyze 12.0
|
|
832
|
Image denoising
|
Confocal fluorescence microscopy
|
|
|
206
|
Visualisation, Montage
|
Data sharing
|
ImageJ
|
|
69
|
Filament tracing, Neuron image analysis, Object feature extraction
|
Bioimage informatics
|
ImageJ
|
|
68
|
Illumination correction
|
High content screening, Light microscopy
|
MATLAB, ImageJ
|
|
67
|
Image analysis, Shape features, Image feature detection, Analysis
|
Bioimage informatics, Machine learning
|
|
|
66
|
Filament tracing, Neuron image analysis
|
Confocal microscopy, Machine learning
|
MATLAB
|
|
65
|
Filament tracing, Image thresholding, Neuron image analysis
|
Confocal microscopy
|
Vaa3D
|
|
64
|
Filament tracing, Neuron image analysis, Distance transform
|
Confocal microscopy
|
Vaa3D
|
|
62
|
|
|
3D Viewer, ICY Annotation, ITK, Vaa3D
|
|
63
|
Filament tracing, Image thresholding, Neuron image analysis
|
Confocal microscopy
|
Vaa3D
|
|
61
|
Cell segmentation, Interactive segmentation, Shape features, Object tracking, Cell tracking
|
Fluorescence microscopy
|
|
|
58
|
Alignment construction, Image reconstruction, Tomographic reconstruction
|
Electron microscopy
|
|
|
53
|
Filament tracing, Neuron image analysis
|
Bioimage informatics, Fluorescence microscopy
|
ImageJ
|
|
52
|
Image analysis, Filament tracing, Active contours
|
Fluorescence microscopy, Confocal fluorescence microscopy
|
Active Contours
|
|
50
|
Alignment construction, Image registration, Affine registration, Rigid registration, Spot detection
|
Correlative Light and Electron Microscopy
|
|
|
49
|
Spot detection, Image segmentation, Cell segmentation
|
Electron microscopy, Light microscopy, Bright field microscopy
|
|
|
1116
|
|
|
3D Viewer
|
|
39
|
Object-based colocalisation, Object-based colocalisation, Pixel-based colocalisation, Colocalisation analysis, Colocalisation analysis
|
Fluorescence microscopy
|
ImageJ
|
|
38
|
|
|
|
|
1115
|
|
|
Image Stitching
|
|
1114
|
Analysis
|
Imaging
|
|
|
37
|
Image deconvolution, Image denoising
|
Super-resolution microscopy
|
ImageJ
|
|
34
|
|
Bioimage informatics
|
|
|
31
|
|
|
|
|
1113
|
|
Statistics
|
|
|
27
|
Image analysis, Image processing, Image visualisation
|
|
|
|
30
|
|
|
ImageJ
|
|
26
|
Image analysis, Image classification, Image annotation, Image visualisation
|
Bioimage informatics, Machine learning
|
Matlab Image Processing Toolbox, Matlab compiler runtime
|
|
23
|
Cell tracking
|
Bioimage informatics
|
|
|
18
|
|
|
|
|
1110
|
|
Bioimage informatics, Digital histology
|
|
|
1108
|
Image processing
|
|
MATLAB
|
|
1107
|
Neuron image analysis, Classification
|
|
MATLAB, Matlab Image Processing Toolbox
|
|
1105
|
Affine registration, Rigid registration
|
Multimodal imaging
|
|
|
1104
|
Image feature detection, Image processing
|
|
MATLAB
|
|
1103
|
Image annotation, Data handling, Image visualisation
|
Bioimage informatics
|
|
|
1102
|
Data handling
|
Data sharing
|
|
|
1101
|
Cell segmentation, Interactive segmentation, Pixel classification, Annotation, Image annotation
|
Digital histology, Machine learning, Supervised learning
|
|
|
1100
|
Image feature detection, Texture extraction, Image processing
|
|
Matlab Image Processing Toolbox, MATLAB
|
|
1099
|
|
|
|
|
1095
|
Image feature detection, Image processing
|
|
MATLAB
|
|
1093
|
Frequency analysis, Image feature detection, Image processing
|
Bioimage informatics
|
MATLAB, MATLAB Wavelet toolbox
|
|
1092
|
Cell segmentation, Object counting, Shape features
|
Fluorescence microscopy
|
scipy, PIL, numpy, Mahotas, OpenCV
|
|
1091
|
Landmark assignment
|
Bioimage informatics, Supervised learning
|
Cytomine
|
|
1090
|
Cell segmentation, Neuron image analysis, Object feature extraction
|
Bioimage informatics, Confocal fluorescence microscopy, Structured illumination microscopy, Confocal microscopy, Bright field microscopy
|
|
|
1089
|
Image analysis
|
Structured illumination microscopy
|
ImageJ
|
|
1088
|
Image classification, Image segmentation
|
Digital histology, Machine learning
|
Cytomine
|
|
1087
|
Image segmentation, Pattern recognition
|
Digital histology, Machine learning
|
Cytomine
|
|
1086
|
Conversion
|
Bioimage informatics
|
|
|
1084
|
Pattern recognition
|
Machine learning
|
Cytomine
|
|
1083
|
Object classification, Pattern recognition
|
Machine learning
|
Cytomine
|
|
1082
|
Cell segmentation, Image feature detection
|
Machine learning
|
scikit-image, Cytomine, Segmentation of Clustered Cells in MATLAB
|
|
10
|
Image registration, Rigid registration, Affine registration
|
Correlative Light and Electron Microscopy
|
|
|
11
|
Data handling
|
Bioimage informatics
|
JavaDoc Parser, Icy Protocols SDK
|
|
9
|
Affine registration, Deformable registration
|
Correlative Light and Electron Microscopy, Multimodal imaging
|
|
|
1081
|
|
|
Segmentation of Clustered Cells in MATLAB, ImageJ Feature Extraction
|
|
165
|
Image analysis, Image processing
|
Bioimage informatics
|
Bio-Formats
|
|
164
|
Interactive segmentation
|
Bioimage informatics
|
|
|
161
|
Data handling
|
Bioimage informatics, Data sharing
|
|
|
162
|
|
|
MATLAB, Imaris
|
|