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Name Category Image requires Type interaction level License/Openness has function has topic
Analyzing gels and western blots with ImageJ Software ImageJ Workflow Manual Free and open source
AnaMorf Software AnaMorph ImageJ Component Automated Free and open source Filament tracing
Angiogenesis / Sprout Analyzer (ImageJ) Software graphical abstract ImageJ Component Semi-automated Free and open source Filament tracing, Neuron image analysis Bioimage informatics, Fluorescence microscopy
Angiogenesis Analyzer for ImageJ Software ImageJ Workflow Automated Free and open source Image analysis Imaging
Angle Helper Software Component Automated, Manual Free and open source Bioimage informatics
ANHIR: Automatic Non-rigid Histological Image Registration Dataset Logo
Animated overlay tutorial Software need a thumbnail Component Automated I do not know
Animation 3D Software Icy, Flying Camera Component Automated Free and open source Visualisation Imaging
Anisotropic Diffusion 2D Software Fiji Component Semi-automated Free and open source Smoothing Bioimage informatics
aNMJ-Morph Software need a thumbnail ImageJ Workflow Semi-automated Free and open source Image processing Bioimage informatics, Confocal fluorescence microscopy
AnnotatorJ Software annotatorJ Fiji Component Manual, Semi-automated Free and open source Image annotation Machine learning
ANTs: Advanced Normalization Tools Software Advanced Normalization Tools ITK Collection Automated Free and open source Image registration, Affine registration, Rigid registration, Deformable registration, Image segmentation, Pixel classification, Illumination correction Bioimage informatics
Any volonteer to tag the Nature Methods Challenge paper Forum topic
anyLabeling Software Python Component Automated, Manual, Semi-automated Free and open source Image classification, Image segmentation, Object detection Bioimage informatics
APEER Software Collection, Component Commercial, Free and open source Analysis, Image segmentation, Cell segmentation, Model-based segmentation, Pixel classification, Annotation, Data handling, Image denoising Imaging, Microscopy, Machine learning
Aphelion Software need a thumbnail Collection Automated, Manual, Semi-automated Commercial Image analysis, Image processing Bioimage informatics
APP (All-path pruning) Software APP_Vaa3D_example_results Vaa3D Component Automated Free and open source Filament tracing, Image thresholding, Neuron image analysis Confocal microscopy
APP2 Software APP2_Vaa3D_example_Result Vaa3D Component Automated, Semi-automated Free and open source Filament tracing, Neuron image analysis, Distance transform Confocal microscopy
Aquiarium Software Functionalities Collection Automated Free and open source Image segmentation, Image correction, Chromatic aberration correction Fluorescence microscopy
Arabidopsis plants (high resolution) Dataset arabidopsis plant (high resolution)