SuperDSM is a globally optimal segmentation method based on superadditivity and deformable shape models for cell nuclei in fluorescence microscopy images and beyond.
This is the ImageJ/Fiji plugin for StarDist, a cell/nuclei detection method for microscopy images with star-convex shape priors ( typically for Dapi like staining of nuclei). The plugin can be used to apply already trained models to new images.
ZEN and APEER – Open Ecosystem for integrated Machine-Learning Workflows
Open ecosystem for integrated machine-learning workflows to train and use machine-learning models for image processing and image analysis inside the ZEN software or on the APEER cloud-based platform
Highlights ZEN
Simple User Interface for Labeling and Training
Engineered Features Sets and Deep Feature Extraction + Random Forrest for Semantic Segmentation
Object Classification workflows
Probability Thresholds and Conditional Random Fields
Import your own trained models as *.czann files (see: czmodel · PyPI)
Import "AIModel Containes" from arivis AI for advanced Instance Segmentation
Integration into ZEN Measurement Framework
Support for Multi-dimensional Datasets and Tile Images
open and standardized format to store trained models
ZEN Intellesis Segmentation
ZEN Intellesis - Pretrained Networks
Intellesis Object Classification
Highlights Aarivis AI
Web-based tool to label datasets to train Deep Neural Networks
Fully automated hyper-parameter tuning
Export of trained models for semantic segmentation and AIModelContainer for Instance Segmentation
