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Name Sort descending Category Image requires Type interaction level License/Openness has function has topic
3D confocal noise simulator Software Component Commercial
3D estimation of synaptic vesicle distribution in serial section TEM (ssTEM) Software need a thumbnail Workflow Automated I do not know
3D Fill holes (mcib3d) Software need a thumbnail mcib3d library, ImageJ Component Automated Free and open source Morphological operation
3D Generalized Riesz-Wavelet Toolbox for Matlab Software need a thumbnail MATLAB, ImageJ Component Automated I do not know
3D ImageJ Suite Software need a thumbnail Collection Free and open source Image segmentation, Morphological operation
3D intensity profile Software Fiji Component Automated Free and open source
3D object based colocalisation Training Material
3D object based colocalization using KNIME Software KNIME Image Processing and Analysis Workflow Automated I do not know Object-based colocalisation, Colocalisation analysis
3D Objects Counter Software need a thumbnail Fiji, ImageJ Component Automated Free and open source Object feature extraction, Shape features, Object counting Fluorescence microscopy
3D OrthoViewer Software need a thumbnail 3D Viewer Component Automated I do not know Image visualisation
3D segmentation (reconstruction) and modeling using Free-D Software need a thumbnail Workflow Automated I do not know
3D Slicer Software 3D slicer 3D Viewer, ITK Collection Automated Free and open source
3D Surface Plot Software ImageJ Component Manual Free and open source Visualisation Bioimage informatics
3D vessel segmentation of synchrotron phase contrast tomography Software need a thumbnail Workflow
3D Viewer Software need a thumbnail ImageJ, 3D Viewer, display, Orthogonal Views Component Automated I do not know
3D-DAOSTORM Software need a thumbnail Component Semi-automated Free and open source Single molecule localisation Super-resolution microscopy, Single molecule localization microscopy
3D-Segmentation Software need a thumbnail Workflow Free and open source
3Dscript Software ImageJ Collection Manual Free and open source Image visualisation, Volume rendering
3View import list Software ImageJ, TrakEM2 Component Automated Free and open source
@msdanalyzer Software Examples of tracks to perform MSD analysis. MATLAB Curve Fitting Toolbox, MATLAB Component Automated, Semi-automated Free and open source Trajectory analysis Live sample imaging, Statistics