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Name Category Image requires Type interaction level License/Openness has function has topic
cython Software need a thumbnail Python Collection Manual Free and open source Bioimage informatics
Cytomine Software cytomine logo Collection Automated, Manual, Semi-automated Free and open source Data handling, Image annotation Data sharing, Digital histology
Cytomine Open Collection Dataset cytomine collection
CytooChip Analysis Software need a thumbnail ImageJ Workflow Automated Free and open source
CytoPacq Software need a thumbnail Collection Semi-automated I do not know Synthetic image generation Bioimage informatics, Data sharing
DAMAN Software daman PyTorch Component Automated Free and open source Cell segmentation Fluorescence microscopy, Bright field microscopy, Machine learning
Data Science in Cell Imaging (DSCI) course material Training Material
Data-analysis strategies for image-based cell profiling Software need a thumbnail Workflow Automated, Semi-automated Free but not open source Analysis, Image segmentation, Object feature extraction, Shape features, Image correction High content screening, Statistics
Daybook2 Software Collection Semi-automated Commercial Fluorescence microscopy
DBSCAN clustering using PALMsiever Software need a thumbnail PALMsiever Workflow Automated I do not know Cell segmentation Single molecule localization microscopy
Debleach Software need a thumbnail Component Automated Free and open source Image correction Fluorescence microscopy
Deconstructing co-localisation workflows: from co-expression assessment to super-resolved co-distribution analysis Training Material
DeconvolutionLab Software need a thumbnail ImageJ Component Automated Free and open source
DeconvolutionLab2 Software ImageJ Collection, Component Automated Free and open source Image deconvolution Microscopy
Deep Learning from scratch Training Material
DeepCell Software deepcell Tensorflow, Keras Component Automated, Semi-automated Free and open source Cell segmentation, Cell tracking, Morphological operation Fluorescence microscopy, Phase contrast microscopy
DeepCLEM Software F1000R Figure 1 DeepCLEM Fiji, Register Virtual Stack Slices (Fiji), CSBDeep a toolbox for Content-aware Image Restoration (CARE) in Fiji Component, Workflow Automated Free and open source Image registration, Affine transformation Correlative Light and Electron Microscopy, Multimodal imaging
DeepImageJ Software deepImageJ ImageJ, Tensorflow Component Free and open source Cell segmentation, Image denoising Machine learning
DEFCoN-ImageJ Software Fiji Component Semi-automated Free and open source Spot detection, Object counting Machine learning
DefineGrid Software CellProfiler Component Automated Free and open source