Synonyms
Noise reduction

CSBDeep, a toolbox for Content-aware Image Restoration (CARE) in Knime

Description

Deep learning based restoration, with guidelines for training. See also the Fiji plugin.

CSBDeep, a toolbox for Content-aware Image Restoration (CARE) in Fiji

Description

Deep learning for fluorescence image restoration (denoising, deconvolution). Requires training on your data set but the procedure is described.

CARE

MorphoGraphX

Description

MorphoGraphX is a free Linux application for the visualization and analysis of 3D biological datasets. Developed by researchers, it is primarily used for the analysis and quantification of 3D live-imaged confocal data sets.

The main research interests adressed by MorphoGraphX are:

  • Shape extraction
  • Growth analysis
  • Signal quantification
  • Protein localization
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MorphoGraphX user interface

Super-Resolution Radial Fluctuations (SRRF)

Description

SRRF is a high-performance analytical approach for Live-cell Super-Resolution Microscopy, provided as a fast GPU-enabled ImageJ plugin. SRRF is capable of extracting high-fidelity super-resolution information from TIRF, widefield and confocals using conventional fluorophores such as GFP. SRRF is capable of live-cell imaging over timescales ranging from minutes to hours.

Comparison TIRF - SRRF

Sigma Filter

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Kalman Stack Filter

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KNIME Anisotropic Diffusion

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