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Name Category Image requires Type interaction level License/Openness has function has topic
LaRoME Software Component Semi-automated Free and open source Image analysis Bioimage informatics
QuantiFish Software QuantiFish User Interface Workflow Automated Free and open source Image registration, Image thresholding, Object counting, Object detection Imaging, In-vivo imaging, Light microscopy, Fluorescence microscopy
HistoCAT Software Collection Automated, Semi-automated Free and open source Analysis, Cell segmentation, Clustering Digital histology, Fluorescence microscopy
NDPItools Software need a thumbnail ImageJ Component Semi-automated Free and open source Image generation Digital histology
ndpi_extractroi Software OpenSlide Component Semi-automated Free and open source Image generation Digital histology
Image-classification with deep learning in KNIME Software Workflow Free and open source Image classification Bioimage informatics
Qualitative annotations Fiji plugins Software GUI ImageJ, Fiji Component Manual, Semi-automated Free and open source Image classification, Object classification, Annotation, Image annotation Bioimage informatics
3D Nuclei Clustering Tool Software ImageJ Workflow Automated, Semi-automated Free and open source Clustering Fluorescence microscopy
Interactive features visualization in KNIME Software KNIME-Workflow Component Free and open source Classification, Clustering, Visualisation High content screening, Statistics
MoBIE-Utils-Python Software need a thumbnail Collection, Component Semi-automated Free and open source Data handling Data sharing, Multimodal imaging
MoBIE Fiji Viewer Software Mobie Fiji, BigDataViewer Component Manual Free and open source Visualisation, Image visualisation Data sharing, Correlative Light and Electron Microscopy, Electron microscopy, Light microscopy, Multimodal imaging
nd-safir Software Component Automated Commercial, Free but not open source Image denoising Widefield microscopy, Fluorescence microscopy, Confocal fluorescence microscopy
ROI 1-click tools for ImageJ/Fiji Software ImageJ, Fiji Component Manual Free and open source Annotation, Image annotation Bioimage informatics
SPHIRE Software need a thumbnail Collection Free and open source
CAREless Software need a thumbnail ImageJ, Python Collection Automated, Manual, Semi-automated Free and open source Image deconvolution, Image denoising, Image enhancement Microscopy, Machine learning
ImageM Software need a thumbnail Matlab Image Processing Toolbox, MATLAB, MATLAB Statistics toolbox Collection Automated, Manual, Semi-automated Free and open source Image analysis, Image segmentation, Data handling, Image visualisation Bioimage informatics
InSegt Software MATLAB Component Semi-automated Free and open source Interactive segmentation, Pixel classification, Texture extraction, Clustering Bioimage informatics, Machine learning
BioImage Model Zoo Software need a thumbnail Collection Free and open source Image classification, Cell segmentation, Image denoising Digital histology, Electron microscopy, Light microscopy, Fluorescence microscopy, Machine learning
Yapic Software need a thumbnail Component Automated Pixel classification Machine learning, Supervised learning
LobSTer Software MATLAB Collection Manual, Semi-automated Free and open source Cell segmentation, Object tracking Bioimage informatics, Fluorescence microscopy, Machine learning