Object detection

Synonyms
Particle detection
Isolated object detection
Description

Multi-template matching can be used to localize multiple objects using one or a set of template images.

Contrary to previous implementations that allow to use only one template, here a set of templates can be used or the initial template(s) can be transformed by rotation/flipping.

Multiple objects detection without redundant detections is possible thanks to a Non-Maxima Supression relying on the degree of overlap between detections.

The solution is available as a Fiji plugin (Multi-Template Matching AND IJ-OpenCV update sites), as a Python package (Multi-Template-Matching on PyPI) and as a KNIME workflow (via KNIME Hub).

need a thumbnail
Description

This is an implementation of Mask R-CNN on Python 3, Keras, and TensorFlow. The model generates bounding boxes and segmentation masks for each instance of an object in the image. It's based on Feature Pyramid Network (FPN) and a ResNet101 backbone.

Description

NEUBIAS-WG5 workflow for nuclei segmentation using Mask-RCNN. The workflow uses Matterport Mask-RCNN. Keras implementation. The model was trained with Kaggle 2018 Data Science Bowl images.

has topic
need a thumbnail
Description

This workflow processes images of cells with discernible nuclei and outputs a binary mask containing where nuclei are detected.

need a thumbnail