EBImage makeBrush

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Series Labeler

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OverlayOutlines

Description

OverlayOutlines is a module from CellProfiler to place outlines of objects over a desired image.

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mcib3d library

Description

Plugins for 3D Image processing and Analyisis in ImageJ. Previously (?) known as [3D ImageJ Suite](http://imagejdocu.tudor.lu/doku.php?id=plugin:stacks:3d_ij_suite:start).

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Panoramic Viewer

Description

When opening the Pannoramic Viewer you see all of your virtual slides in thumbnail view. Selecting one (or up to 10 at a time) the slide gets under the virtual objective of the virtual microscope. Here you can move and change the magnification of the slide quickly and easily using the mouse. Emphasizing 'quickly' is important considering the fact that the size of an average virtual slide can easily be more than 1 GB.

 

Main characteristics:

  • Seamless zooming and moving of the virtual slide
  • Bookmarking (annotating) on the spot, i.e. defining the specific part of the sample by drawing; finding and reading of previously made bookmarks
  • Easy and precise measurements
  • Real-time changing of brightness, contrast and color bias
  • Fluorescent slide handling, separate channel view & pseudo-colorization
  • Slide uploading and downloading for teleconsultation
  • Synchronized viewing (moving and zooming) of multiple slides for comparison purposes
  • Publication quality image capture of displayed areas (.JPG, .BMP, .TIFF)
  • TIFF, MIRAX slide and Meta-XML export for Carl Zeiss AxioVision™ compatibility
  • Scanmap export for rescanning existing digital slides
  • Easily expandable functionality via the software modules

Arrow

Description

This version replaces the old Arrow_.class tool that was present in Fiji before. The main changes are the ability to draw the arrow as a floating selection, and to tune its shape.

Warning: Since ImageJ version 1.43n, a similar tool, made by Wayne Rasband, does a similar thing from the ImageJ core, see here.

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Scale Bar

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ICY Annotation

Description

This plugin (Icy Tool) allows the user to create and edit annotations. Annotations are blocks of text that the user can put anywhere in the sequence. Run the plugin to get the GUI with all the features. Once a note is added to a sequence, left click on it to edit this one. If you closed your GUI and you have some notes on your sequence, right click and select "edit" to display the GUI.

As of now, the annotations are saved when the sequence is closed, but you have to run the plugin at least once to be able to see all the annotations in the image.

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