Image registration

Image registration is the process of transforming different sets of data into one coordinate system. Registration is necessary in order to be able to compare or integrate the data obtained from different sensors/imaging modalities, at different times, from different view points, etc. . Registration can be based on correspondence established between the landmarks or feature points. Alternatively, some similarity/distance metric is established between the image intensity maps to navigate the registration process.

Synonyms
Image alignment

Cancer Imaging Phenomics Toolkit (CaPTk)

Collection
Description

CaPTk is a software platform for analysis of radiographic cancer images, currently focusing on brain, breast, and lung cancer. CaPTk integrates advanced, validated tools performing various aspects of medical image analysis, that have been developed in the context of active clinical research studies and collaborations toward addressing real clinical needs. With emphasis given in its use as a very lightweight and efficient viewer, and with no prerequisites for substantial computational background, CaPTk aims to facilitate the swift translation of advanced computational algorithms into routine clinical quantification, analysis, decision making, and reporting workflow. Its long-term goal is providing widely used technology that leverages the value of advanced imaging analytics in cancer prediction, diagnosis and prognosis, as well as in better understanding the biological mechanisms of cancer development.

has topic
Bioimage informatics
has function
Image registration
Image analysis
Image segmentation
Object feature extraction
Image enhancement
Image visualisation
CaPTk

Spark Stitcher

Component
Description

Reconstruct big images from overlapping tiled images on a Spark cluster.

The code is based on the Stitching plugin for Fiji https://github.com/fiji/Stitching

has topic
Light microscopy
Light-sheet microscopy
has function
Image registration
Illumination correction
Image stitching
SparkStitching

Fiji CMTK GUI

Component
Description

Working version of a simple GUI frontend for CMTK image registration tools in Fiji

has topic
Imaging
Multimodal imaging
has function
Image registration
Affine registration
Deformable registration
need a thumbnail

MIPAV

Collection
Description

The MIPAV (Medical Image Processing, Analysis, and Visualization) application enables quantitative analysis and visualization of medical images of numerous modalities such as PET, MRI, CT, or microscopy. Using MIPAV's standard user-interface and analysis tools, researchers at remote sites (via the internet) can easily share research data and analyses, thereby enhancing their ability to research, diagnose, monitor, and treat medical disorders.

has topic
Bioimage informatics
Imaging
Magnetic resonance imaging
Computerized tomography
has function
Image registration
Image analysis
Object-based colocalisation
Image segmentation
Image thresholding
Pixel classification
Smoothing
Image visualisation
Image feature detection
Colocalisation analysis

ANTs: Advanced Normalization Tools

Collection
Description

ANTs computes high-dimensional mappings to capture the statistics of brain structure and function.

Image Registration

Diffeomorphisms: SyN, Independent Evaluation: Klein, Murphy, Template Construction (2004)(2010), Similarity Metrics, Multivariate registration, Multiple modality analysis and statistical bias

Image Segmentation

Atropos Multivar-EM Segmentation (link), Multi-atlas methods (link) and JLF, Bias Correction (link), DiReCT cortical thickness (link), DiReCT in chimpanzees

 

has topic
Bioimage informatics
has function
Image registration
Affine registration
Rigid registration
Deformable registration
Image segmentation
Pixel classification
Illumination correction
Advanced Normalization Tools
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