Smoothing

Synonyms
Gaussian filtering
Gaussian blurring
Gaussian smoothing
Blurring
Description

This workflow segments glands from H&E stained histopathological images
from the Gland Segmentation Challenge (GlaS2015) using deep learning (UNet).
UNet implementation largely inspired from PyTorch-UNet by Milesial. 

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Description

This workflow processes images of cells with discernible nuclei and outputs a binary mask containing where nuclei are detected.

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Description

The macro will segment nuclei and separate clustered nuclei in a 3D image using a distance transform watershed. As a result an index-mask image is written for each input image.

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Description

Performs 3D Gaussian blurring.

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