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Name Category Image requires Type interaction level License/Openness has function has topic
Object Tracking (MU-Lux-CZ) Software need a thumbnail OpenCV, scikit-image, Tensorflow, Keras Workflow Automated Free and open source Object tracking Machine learning
Object Tracking (Octave) Software need a thumbnail GNU Octave Workflow Automated Free and open source Object tracking Bioimage informatics, Live sample imaging
Object Tracking and Metadata Management Software CellProfiler Workflow Automated Free and open source Cell tracking Confocal microscopy
OligoMacro Toolset Software need a thumbnail StackReg, TurboReg Workflow Semi-automated Free and open source Image analysis, Cell segmentation, Cell tracking, Plotting Live sample imaging, In-vitro imaging, Widefield microscopy, Transmission light microscopy, Phase contrast microscopy
OMERO Software Omero OMERO Collection Manual Free and open source Data handling, Image annotation Bioimage informatics, Data sharing
OMERO FLIMfit Software OMERO Collection Semi-automated Free and open source
OMERO.editor Software need a thumbnail OMERO Component Manual I do not know Editing Data sharing
OMERO.figure Software OMERO Collection Manual Free and open source
OMERO.insight client Software OMERO Collection Manual Free and open source
OMERO.insight-ij client Software need a thumbnail ImageJ, OMERO Component Automated I do not know
OMERO.matlab Software need a thumbnail MATLAB, OMERO Component Automated I do not know
OMERO.searcher Software need a thumbnail OMERO Component Automated I do not know
OMERO.server Software need a thumbnail Component Automated I do not know
OMERO.web client Software need a thumbnail OMERO Component Manual I do not know Data handling Bioimage informatics, Data sharing
OMERO.webtagging Software need a thumbnail OMERO.web client Component Automated, Manual Free and open source Annotation Bioimage informatics
On-the-fly image processing with Python and napari Training Material
Oocytor Software Fiji, CSBDeep a toolbox for Content-aware Image Restoration (CARE) in Fiji, Tensorflow, FeatureJ Hessian Component Automated Free and open source Image analysis, Image segmentation, Cell segmentation, Object feature extraction Transmission light microscopy
Open Microscopy Environment (OME) Software need a thumbnail OMERO, Bio-Formats Collection Automated, Manual, Semi-automated I do not know Analysis, Visualisation Bioimage informatics, Data sharing, Imaging
Open Virtual stack in Fiji Software need a thumbnail Component Manual
OpenCL Software Collection Manual Free but not open source