Component

A generalist framework for multi-dimensional automatic spot detection and quantification.

SpotMAX is designed to accomplish two tasks:

1. Detecting and quantifying globular-like structures (a.k.a. "spots")
2. Segmenting and quantifying fluorescently labelled structures

It supports 2D, 3D, 4D, and 5D data, i.e., z-stacks, timelapse, and multiple fluorescence channels (and combinations thereof).

Tools for segmentation and tracking in microscopy build on top of Segment Anything. Segment and track objects in microscopy images interactively with a few clicks.

This is a placeholder component created for demonstration purposes. It serves as an example of how to create a minimal software entry in BIII. This component represents a basic image processing algorithm that can be used as part of a bioimage analysis workflow.

Ultralytics creates cutting-edge, state-of-the-art (SOTA) YOLO models built on years of foundational research in computer vision and AI. Constantly updated for performance and flexibility, our models are fast, accurate, and easy to use. They excel at object detection, tracking, instance segmentation, image classification, and pose estimation tasks.

Big-FISH is a python package for the analysis of smFISH images (2D/3D). It includes various methods to analyze microscopy images, such spot detection and segmentation of cells and nuclei.