Fluorescence microscopy

Filopodyan

Collection
Description

Fiji plugin for detecting, tracking and quantifying filopodia

has topic
Fluorescence microscopy
has function
Image analysis
Filament tracing
Object tracking

MSRC Registration Toolbox

Component
Description

This python toolbox performs registration between 2-D microscopy images from the same tissue section or serial sections in several ways to achieve imaging mass spectrometry (IMS) experimental goals.

This code supports the following works and enables others to perform the workflows outlined in the following works, please cite them if you use this toolbox:

  • Advanced Registration and Analysis of MALDI Imaging Mass Spectrometry Measurements through Autofluorescence Microscopy, 10.1021/acs.analchem.8b02884

  • Next Generation Histology-directed Imaging Mass Spectrometry Driven by Autofluorescence Microscopy, 10.1021/acs.analchem.8b02885

has topic
Fluorescence microscopy
Multimodal imaging
has function
Image registration
Feature-based registration
need a thumbnail

NanoJ

Collection
Description

Set of Tools for super resolution microscopy

has topic
Live sample imaging
Fluorescence microscopy
Super-resolution microscopy
has function
Image registration
Image analysis
Image processing
Image correction

HAWK

Component
Description

Preprocessing step for high-density analysis methods in super resolution localisation microscopy: it aims at correcting artefacts due to these approaches with based on Haar Wavelet Kernel Analysis.

has topic
Fluorescence microscopy
Super-resolution microscopy
has function
Image processing
Image correction
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