Filopodyan

Description

Fiji plugin for detecting, tracking and quantifying filopodia

CellProfiler Analyst CPA

Description

CellProfiler Analyst (CPA) allows interactive exploration and analysis of data, particularly from high-throughput, image-based experiments. Included is a supervised machine learning system which can be trained to recognize complicated and subtle phenotypes, for automatic scoring of millions of cells. CPA provides tools for exploring and analyzing multidimensional data, particularly data from high-throughput, image-based experiments analyzed by its companion image analysis software, CellProfiler.

CPA

ContourLines

Description

ImageJ/FIJI plugin generating contour lines with equal spacing on top of an image (using overlay).

3D Fill holes (mcib3d)

Description

Runs fill holes operation on 3D images.

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Maximum (3D) VIB Protocol

Description

This component convolves the image with maximum filter. Each voxel is set to the maximum value of its neighborhood. The neighborhood is defined by a kernel, which has a diameter of 3 voxels.

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ROI Measure

Description

ROI measurement plug-in for Icy.

has function
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Minimum (3D) Filter VIB Protocol

Description

This component convolves the image with minimum filter. Each voxel is set to the minimum value of its neighborhood. The neighborhood is defined by a kernel, which has a diameter of 3 voxels.

has function
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ImageJ Built-in Macro Functions

Description

A set of ImageJ Built-in Macro Functions used to perform operations on the ImageJ platform.

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Thresholder (ImageJ)

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Filament Tracing (ImageJ)

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