Cell tracking using MU-Lux-CZ algorithm. Dockerized Workflow for BIAFLOWS implemented by Martin Maska (Masaryk University).
pyimagej provides a set of wrapper functions for integration between ImageJ and Python.
It also provides a high-level entry point for invoking ImageJ server APIs.
Track non-dividing particles in 2D time-lapse image.
Execute Nuclei Segmentation in 3D images using pixel classification with ilastik.
U-Net segmentation as presented in Reference Publication. The model predicts three classes: background, edge and foreground. The model was trained with Kaggle Data Science Bowl (DSB) 2018 training set.
