Nuclei Segmentation (DeepCell)

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Type
Component
Author
Paavolainen, Lassi
Requires
scikit-image
scipy
numpy
matplotlib
Libtiff
scikit-learn (sklearn)
Execution Platform
Linux
Mac
Windows
Programming Language
Python
Supported image dimension
2D
Interaction Level
Automated
License/Openness
Free and open source
Description

Nuclei Segmentation using Deep Learning for single cell analysis (DeepCell).

has topic
Machine learning
has biological terms
cells
Entry Curator
lascholz
Download Page
Neubias BIAFLOWS workflow of Nuclei Segmentation with DeepCell
Reference Publication Link
Deep Learning Automates the Quantitative Analysis of Individual Cells in Live-C…