Voxelytic-Align is a commercial software provided as a service on cloud targetted to electron microscopy reconstruction (alignement, artifact correction...)


Hot-Knife is a library specifically designed for FIB-SEM data and thick sections, which includes code for flattening, deformable alignment with features and a more robust kind of block-matching, and some visualization, manual correction, and import and export tools (n5).


An implementation of Belief Propagation for factor graphs, also known as the sum-product algorithm

has topic
need a thumbnail

Non linear registration intensity based for MRI brain exams. To be applied after FLIRT

a brain mri

FLIRT (FMRIB's Linear Image Registration Tool) is a fully automated robust and accurate tool for linear (affine) intra- and inter-modal brain image registration.

FLIRT comes with a main GUI as well as three supporting guis:

  • ApplyXFM - for applying saved transformations and changing FOVs
  • InvertXFM - for inverting saved transformations
  • ConcatXFM - for concatenating saved transformations