Plotting

Visualisation vs Plotting vs Image generation. Should these be merged? Which of these should be the top concept, and which sub-concepts, and which narrow synonyms?

Description

CompuCell3D is a flexible scriptable modeling environment, which allows the rapid construction of sharable Virtual Tissue in-silico simulations of a wide variety of multi-scale, multi-cellular problems including angiogenesis, bacterial colonies, cancer, developmental biology, evolution, the immune system, tissue engineering, toxicology and even non-cellular soft materials. CompuCell3D models have been used to solve basic biological problems, to develop medical therapies, to assess modes of action of toxicants and to design engineered tissues. CompuCell3D intuitive and make Virtual Tissue modeling accessible to users without extensive software development or programming experience.

It uses Cellular Potts Model to model cell behavior.

Description

MaMuT is an end user plugin that combines the BigDataViewer and TrackMate to provide an application that allow browsing, annotating and curating annotations for large image data.

Description

Shiny is an R package that makes it easy to build interactive web apps straight from R.

has function
Description

DisplayScatterPlot plots the values for two measurements.

has function
need a thumbnail