library

A collection of Java tools and HTTP services (APIs) for rendering transformed image tiles that includes:

• a JSON data model for render, tile, and transform specifications,
• a Java stand-alone render application / library,
• a set of render web services that provide RESTful APIs to persisted collections of tile and transform specifications, and
• a set of Java clients for processing/rendering data that utilize the render web services to retrieve and/or store persisted specifications.
• Docker packaging for building the libraries and deploying the render web services

The basic concept is to render images (tiles) based on transformation files, without having to store the big generated image from an alignment of tiles (mosaicking).

Quote:

pyTFM is a python package that allows you to analyze force generation and stresses in cells, cell colonies, and confluent cell layers growing on a 2-dimensional surface. This package implements the procedures of Traction Force Microscopy and Monolayer Stress Microscopy. In addition to the standard measures for stress and force generation, it also includes the line tension, a measure for the force transfer exclusively across cell-cell boundaries. pyTFM includes an addon for the image annotation tool clickpoints allowing you to quickly analyze and vizualize large datasets.

Phindr3D is a comprehensive shallow-learning framework for automated quantitative phenotyping of three-dimensional (3D) high content screening image data using unsupervised data-driven voxel-based feature learning, which enables computationally facile classification, clustering and data visualization.

Please see our GitHub page and the original publication for details.

Viv is a JavaScript library providing utilities for rendering primary imaging data. Viv supports WebGL-based multi-channel rendering of both pyramidal and non-pyramidal images. The rendering components of Viv are provided as Deck.gl layers, facilitating image composition with existing layers and updating rendering properties within a reactive paradigm.

The library contains several helper functions to generate MoBIE project folders and add data to it.  Itis a python library to generate data in the MoBIE data storage layout. 

For further information, look to http://biii.eu/mobie-fiji-viewer