plugin

Simple Operations (Icy)

Collection
has topic
Bioimage informatics
has function
Image processing
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Workbooks (Icy)

Component
has function
Data handling
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Intensity Profile (Icy)

Component
Description

Plots an intensity profile of a given ROI.

Can plot mean over T or/and Z too.

has topic
Statistics
has function
Image analysis
Plotting
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Icy Membrane Filter

Component
has topic
Bioimage informatics
has function
Image processing
Image enhancement
Feature enhancement
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Particles animation

Component
Description

A fun simulator. It's not very useful for biology but it's a good demo!

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Measure Image Intensity (deprecated)

Component
Description

This module has been deprecated; in Cell Profiler 3.0, it is a function in module "Measurement"

has function
Analysis
Colocalisation analysis
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FlagImage

Component
Description

CellProfiler FlagImage module allows to assign a flag if an image meets certain measurement criteria that you specify (for example, if the image fails a quality control measurement). The value of the flag is 1 if the image meets the selected criteria (for example, if it fails QC), and 0 if it does not meet the criteria (if it passes QC).

has topic
Bioimage informatics
High content screening
Statistics
has function
Classification

Montage 2D

Component
Description

Displays 3D data as 2D montages of all slices.

has topic
Bioimage informatics
has function
Image visualisation
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Shepp-Logan Phantom

Component
has topic
In-silico reconstruction
has function
Synthetic image generation
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Sigma Filter

Component
has topic
Bioimage informatics
has function
Image denoising
Image correction
Image enhancement
Smoothing
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