plugin

Fills the holes in all the ROI of the active sequence (also works in Protocols).

OverlayOutlines is a module from CellProfiler to place outlines of objects over a desired image.

The grayscale watershed segmentation is useful to segment particles in contact when the model of shape is unknown a priori.

This plugin copies the pixel size from the calibration of one image or stack to a second image or stack. This allows one to copy the spatial calibration from one stack to another.

A second dialog allows to enter the scale factors.

This plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works on both binary and gray-scale data. Output can be pushed to the swimming pool for other plug-ins to further exploit the extracted objects.

A Java package for running ImageJ and Fiji within Matlab.

A TrackProcessor that allows the user to monitor, visualize, and export, the intensity profile of tracks in time lapse sequences of 2D images.

This display the Instant Speed of tracks for the Icy Track Manager.