Automated

Used to be the micro manager libraries but now that is an empty plugin (provided for backward compatibility).

Plots an intensity profile of a given ROI.

Can plot mean over T or/and Z too.

Thresholding method

The used thresholding Method: Mean, Median, Sauvola, MidGrey, Bernsen, Niblack. Mean, Niblack and Sauvola are implemented using the fast integral image approach.

This module has been deprecated; in Cell Profiler 3.0, it is a function in module "Measurement"

Displays 3D data as 2D montages of all slices.

This is an example that find all the image.bin.gz files from channel 01 under a directory and makes an image stack of all the slices numbered 23. It needs to be customized to be useful to you.

Identifies connected components in an image.

Connected component labeling (alternatively connected component analysis) is an algorithmic application of graph theory, where subsets of connected components are uniquely labeled. Connected component labeling is used in computer vision to detect connected regions in binary digital images.

A graph, containing vertices and connecting edges, is constructed from relevant input data. The vertices contain information required by the comparison heuristic, while the edges indicate connected 'neighbors'. An algorithm traverses the graph, labeling the vertices based on the connectivity and relative values of their neighbors. Connectivity is determined by the medium; image graphs, for example, can be 4-connected or 8-connected.

Copied from wikipedia [1] [2]

This node is contained in KNIME Image Processing Extension

The SSIM is an index measuring the structural similarity between two images. It is valued between -1 and 1. When two images are nearly identical, their SSIM is close to 1.

Displays a live tool tip on the current focused ROI in an image.

The tooltip displays the following informations about the ROI:
– position and size.
– number of interior points and contour points.
– perimeter, area, surface area, volume.
– min, max, mean intensity.

This plugin is a daemon plugin, that means plugin is automatically loaded when Icy starts.