Blood vessels tracing in 3D image from Tubeness filtering (user defined scale), 3D opening (radius set to 2), thresholding (user defined level) and 3D skeletonization.
3D Neuron Tracing with a Dockerized version of Vaa3D MOST Raytracer.
3D Neuron Tracing using Dockerized version of Vaa3D Minimum Spanning Tree (MST).
Rivuletpy dockerised workflow for BIAFLOWS.
Vaa3d All-Path-Pruning 2.0 (APP2) dockerised workflow for BIAFLOWS.
