| Manual Tracking Components of ImageJ |
35.784 |
|
2D, time-series |
Fiji |
Software |
… Cordelieres TrackMate developers E. Meijering Requires Fiji Execution Platform Linux Mac Windows Programming … License/Openness Free and open source Description The Fiji distribution of ImageJ comes with several manual tracking tools, two of which are particularly useful: * … |
| MicrotubuleTracker in FIJI |
20.733 |
|
2D, 3D, time-series |
Fiji |
Software |
… Type Collection Component Author Varun Kapoor Requires Fiji Execution Platform Linux Mac Windows Implementation Type … movie (batch mode). has function Filament tracing Object tracking Trajectory analysis has topic In-vitro imaging has … more than one movie (batch mode). … MicrotubuleTracker in FIJI … |
| 2D and 3D tracking based on global cost function optimization |
19.593 |
|
2D, 3D, time-series |
ImageJ, MTrackJ, ImageScience.jar, Jama, Tracking2.0 |
Software |
… : Used for visualization of tracks. Preinstalled in Fiji. Imagescience.jar : This library is used by MTrackJ. Use … site to install this plugin. jama.jar . Preinstalled in Fiji. ##Advantages: support blinking (with a parameters … some analysis results provided. No dynamic model. The tracking part is not dependent of ImageJ. Pitfalls: does not … |
| Microtubule end tracking in Drosophila Oocyte |
19 |
|
2D, time-series |
Fiji, TrackMate, Bleach Correction, Fourier Bandpass Filter, Temporal Medial Filter |
Software |
… Type Workflow Author Graeme Ball Requires Fiji TrackMate Bleach Correction Fourier Bandpass Filter … Free and open source Description Microtubule end tracking in live cell fluorescent images of Drosophila oocyte … e.g. using Image->Adjust->Bleach Correction in Fiji/ImageJ uneven illumination : Fourier bandpass filtering … |
| 2D tracking using KNIME and Fiji |
18 |
|
2D, time-series |
KNIME Image Processing and Analysis, Fiji |
Software |
… Reymann Requires KNIME Image Processing and Analysis Fiji Execution Platform Linux Mac Windows Programming … steps, objects/cells are segmented first, then it uses Fiji TrackMate LAP method for the tracking task. Documentation starts from p23 of the linked … |
| Manual tracking with TrackMate |
17 |
|
2D, 3D, time-series |
Fiji |
Software |
… Type Component Author Jean-Yves Tinevez Requires Fiji Execution Platform Linux Mac Windows Implementation Type … License/Openness Free and open source Description Manual tracking using Trackmate plugin (comes with FIji, so no installation required if you are using Fiji). … |
| The NEMO dots assembly: Single-particle tracking and analysis |
17 |
|
|
|
Software |
… source Description This workflow presents single-particle tracking in Fiji using Track-Mate, and track motility analysis in MATLAB … … This workflow presents single-particle tracking in Fiji using Track-Mate, and track motility analysis in MATLAB … |
| TrackMate |
16.947 |
|
2D, 3D, multi-channel, time-series |
Fiji |
Software |
… Type Collection Author Jean-Yves Tinevez Requires Fiji Execution Platform Linux Mac Windows Implementation Type … TrackMate provides the tools to perform single particle tracking (SPT). SPT is an image analysis challenge where the … Last modified 10/17/2019 - 10:27 Download Page http://fiji.sc/TrackMate Documentation Link Documentation Manual … |
| BTrackMate |
14 |
|
|
|
Software |
… step creates a CSV file which can then be loaded into the Fiji tracker to do particle tracking with TrackMate interface. Post date 01/28/2021 - … Last modified 01/28/2021 - 14:50 Download Page Update site Fiji MTrack Usage Example Link … |
| Particle Tracker 2D/3D |
13.962 |
|
2D, 3D, multi-channel, time-series |
Fiji, MosaicSuite |
Software |
… Ivo Sbalzarini Janicke Cardinale Mosaic group Requires Fiji MosaicSuite Execution Platform Linux Mac Windows … efficient, two- and three-dimensional, feature point-tracking tool for the automated detection and analysis of … as recorded by video imaging in cell biology. The tracking process requires no apriori mathematical modelling … |
| HyphaTracker |
11.985 |
|
2D, time-series |
ImageJ |
Software |
… Language ImageJ Macros is compatible with ImageJ Fiji Supported image dimension 2D time-series Interaction … Image analysis Filament tracing Image segmentation Object tracking Drift correction Image processing has topic Light … … neuron image analysis … neuron reconstruction … Tracking … Image pre-processing … Image filtering … Image … |
| Multi Kymograph |
11.893 |
|
2D, time-series |
ImageJ |
Software |
… Description This macro and plugins suite for ImageJ (and Fiji) serves to measure the velocity of moving structures and … disruption (e.g. laser surgery) has function Object tracking Trajectory analysis has topic Bioimage informatics … informatics … This macro and plugins suite for ImageJ (and Fiji) serves to measure the velocity of moving structures and … |
| Particle Tracker |
10 |
|
3D, time-series |
ImageJ, MosaicSuite |
Software |
… Free and open source has function Spot detection Particle tracking Trajectory analysis has topic Bioimage informatics … Last modified 10/18/2019 - 11:05 Download Page http://fiji.sc/Particle_Tracker Documentation Link http://fiji.sc/Particle_Tracker Reference Publication Link Feature … |
| Manual Tracking ImageJ |
10 |
|
2D, 3D, time-series |
Fiji |
Software |
… Type Component Author Fabrice Cordelieres Requires Fiji Execution Platform Linux Mac Windows Implementation Type … and open source Description An ImageJ plugin for manually tracking objects by mouse clicking. This plugin is bundled with Fiji. has function Object tracking has topic Live sample … |
| MaMuT |
9 |
|
2D, 3D, multi-channel, time-series |
Fiji, BigDataViewer, TrackMate |
Software |
… orcid.org/0000-0002-0998-4718 Pietzsch Tobias Requires Fiji BigDataViewer TrackMate Execution Platform Linux Mac … image data. has function Image feature detection Object tracking Cell tracking Image visualisation Overlay Plotting Image … |
| PTA2 |
9 |
|
2D |
Fiji |
Software |
… Type Component Author Yoshiyuki Arai Requires Fiji Execution Platform Linux Mac Windows Implementation Type … is an ImageJ1.x plugins that enable automatic particle tracking" This plugin is developed specifically for single-molecule imaging, so it's good at tracking spots with noisy background. has function Particle … |
| MTrack2 (ImageJ) |
9 |
|
2D, time-series |
ImageJ |
Software |
… Free and open source has function Isolated object tracking has topic Bioimage informatics Additional keywords … Last modified 03/02/2020 - 16:46 Download Page http://fiji.sc/MTrack2 Documentation Link http://fiji.sc/MTrack2 … migration.tool … 5016 … Nico Stuurman … … |
| MosaicSuite |
8.506 |
|
2D, 3D, time-series |
Fiji, ImageJ 2.x |
Software |
… Ziegler, Urs Berger, Phillip Koumoutsakos, Petros Requires Fiji ImageJ 2.x Execution Platform Linux Mac Windows … microscopy. Tools included: 2D/3D single-particle tracking tool which can be used to track bright spots in … tracing Spot detection Image segmentation Particle tracking Image convolution Illumination correction … |
| Filopodyan |
7 |
|
2D, time-series |
ImageJ, Fiji |
Software |
… Type Collection Author Butler Richard Requires ImageJ Fiji Execution Platform Linux Mac Windows Implementation Type … License/Openness Free but not open source Description Fiji plugin for detecting, tracking and quantifying filopodia has function Image … |
| MIA |
4.814 |
|
2D, 3D, multi-channel, time-series |
Fiji, MorphoLibJ |
Software |
… Type Collection Author Stephen Cross Requires Fiji MorphoLibJ Execution Platform Linux Mac Windows … Image segmentation Object counting Object detection Object tracking Morphological operation Image visualisation has … … Particle detection … Isolated object detection … Tracking … Morphological image processing … Mathematical … |
| MosaicIA |
4 |
|
3D, time-series |
Fiji, MosaicSuite |
Software |
… Shivanandan, A. Radenovic, and I. F. Sbalzarini Requires Fiji MosaicSuite Execution Platform Linux Mac Windows … Image segmentation Interactive segmentation Particle tracking has topic Bioimage informatics Entry Curator flevet … … Image segmentation … Interactive segmentation … Particle tracking … Bioimage informatics … MosaicIA is a tool to … |
| Myotracker |
4 |
|
2D |
Fiji |
Software |
… Type Workflow Author Jose Fernandez Requires Fiji Execution Platform Linux Mac Windows Implementation Type … |
| 3View import list |
4 |
|
3D |
ImageJ, TrakEM2 |
Software |
… stored in the original directories. has function Object tracking Data handling has topic Serial block-face scanning … instruction in the documentation page Documentation Link Fiji wiki: 3View import list … migration.tool … 4497 … 4498 … 4524 … 4023 … 4184 … 4088 … Tracking … basic_html … migration … Object tracking … Data … |
| mamut2r |
3 |
|
|
|
Software |
… to imports data coming from .xml files generated with the Fiji MaMuT plugin for lineage and tracking of biological objects. {mamut2r} also allows to … to imports data coming from .xml files generated with the Fiji MaMuT plugin for lineage and tracking of biological … |
| ImarisXT |
2 |
|
|
ImageJ, Imaris, MATLAB, ImarisCell, ImarisMeasurementPro, ImarisTrack, ImarisFilamentTracer, Python |
Software |
… Documentation Link ImageJ and Fiji Support in ImarisXT … migration.tool … Oxford … |
