Filament tracing

Filament tracing operations are image analysis operations in which there is an image of a filamentous structure (it may be a tree-like structure, a filament network or a agglomeration of single 'stick-like' filaments) as input and outputs data that represent the filament, most commonly a skeleton representation of the filaments and their diameters or surfaces.

Synonyms
Tubular structure extraction
biofilament tracing
Curvilinear structure reconstruction
Curvilinear structure detection
neuron image analysis
neuron reconstruction

Neuron Tracing Vaa3D (MOST)

Workflow
Description

3D Neuron Tracing with a Dockerized version of Vaa3D MOST Raytracer.

has function
Filament tracing
Neuron image analysis
need a thumbnail

Neuron Tracing Vaa3D (MST)

Workflow
Description

3D Neuron Tracing using Dockerized version of Vaa3D Minimum Spanning Tree (MST).

has topic
Bioimage informatics
has function
Filament tracing
Neuron image analysis
need a thumbnail

Neuron Tracing 3D (Rivuletpy)

Workflow
Description

Rivuletpy dockerised workflow for BIAFLOWS.

has topic
Machine learning
has function
Filament tracing
Neuron image analysis
need a thumbnail

Neuron Tracing Vaa3D (App2)

Workflow
Description

Vaa3d All-Path-Pruning 2.0 (APP2) dockerised workflow for BIAFLOWS.

has topic
Bioimage informatics
has function
Filament tracing
Neuron image analysis
need a thumbnail

Filopodyan

Collection
Description

Fiji plugin for detecting, tracking and quantifying filopodia

has topic
Fluorescence microscopy
has function
Image analysis
Filament tracing
Object tracking
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