VascuSynth

Description

VascuSynth is an ITK-based synthetic image generator. It synthesizes volumetric images of vascular trees and generates a .gxl file of the ground-truth tree structure. VascuSynth receives a number of .txt configuration files and is capable of generating both ground truth ('ideal') images and images with added noise. The user is capable of choosing from a set simple noise additions and artefacts.

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Nuclei Tracking (ImageJ)

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3D Fill holes (mcib3d)

Description

Runs fill holes operation on 3D images.

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Maximum (3D) VIB Protocol

Description

This component convolves the image with maximum filter. Each voxel is set to the maximum value of its neighborhood. The neighborhood is defined by a kernel, which has a diameter of 3 voxels.

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ROI Measure

Description

ROI measurement plug-in for Icy.

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Minimum (3D) Filter VIB Protocol

Description

This component convolves the image with minimum filter. Each voxel is set to the minimum value of its neighborhood. The neighborhood is defined by a kernel, which has a diameter of 3 voxels.

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Spot Detection 3D (ImageJ)

Description

This workflow detects spots from a 3D image by using straightforward set of ImageJ components. It receives the Laplacian Radius and the Threshold  value s input.

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Thresholder (ImageJ)

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Filament Tracing (ImageJ)

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