Type
Author
Tosí, Sébastien
Requires
Execution Platform
Implementation Type
Programming Language
is compatible with
Supported image dimension
Interaction Level
License/Openness
Workflow steps
Step 1: Compute Gaussian Blur
Step 2: 3D Fill holes
Step 3: Threshold Image
Step 4: Compute Distance Transform Watershed 3D
Description

The macro will segment nuclei and separate clustered nuclei in a 3D image using a binary watershed. As a result an index-mask image is written for each input image.

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