brain

Nanotomy: Large-scale electron microscopy (EM) datasets

Submitted by Perrine on Tue, 03/14/2023 - 12:36

Nanotomy shares based on the ATLASTM browser-based viewer from Zeiss. This database allow to browse data set from the publications of Giepmans lab. 

The full list of data set is availble from :

nanotomy.org

Except the papers and where otherwise noted, this work is licensed under a Creative Commons Attribution 4.0 International License

 

Images can be downloaded but only as screenshots (saved as png).

MeVisLab

Collection
has topic
Magnetic resonance imaging
Tomography
Computerized tomography
has function
Image registration
Image segmentation
Morphological operation
Visualisation
Volume rendering

ViBE-Z

Collection
Description

The Virtual Brain Explorer (ViBE-Z) is a software that automatically maps gene expression data with cellular resolution to a 3D standard larval zebrafish (Danio rerio) brain. It automatically detects 14 predefined anatomical landmarks for aligning data. It also offers a database and atlas. The ViBE-Z database, atlas and software are provided via a web interface. A data preparation step is needed in order to provide the right input data and format.

has topic
Bioimage informatics
Confocal fluorescence microscopy
Multimodal imaging
has function
Image registration
Deformable registration
need a thumbnail
Subscribe to brain