brain

Nanotomy: Large-scale electron microscopy (EM) datasets

Submitted by Perrine on Tue, 03/14/2023 - 12:36

Nanotomy shares based on the ATLASTM browser-based viewer from Zeiss. This database allow to browse data set from the publications of Giepmans lab. 

The full list of data set is availble from :

nanotomy.org

Except the papers and where otherwise noted, this work is licensed under a Creative Commons Attribution 4.0 International License

 

Images can be downloaded but only as screenshots (saved as png).

Description

The Virtual Brain Explorer (ViBE-Z) is a software that automatically maps gene expression data with cellular resolution to a 3D standard larval zebrafish (Danio rerio) brain. It automatically detects 14 predefined anatomical landmarks for aligning data. It also offers a database and atlas. The ViBE-Z database, atlas and software are provided via a web interface. A data preparation step is needed in order to provide the right input data and format.

need a thumbnail