plugin

Description

Draws a contour plot on top of a sequence.

has function
need a thumbnail
Description

The Graph Cut plugin provides a way to obtain a globally smooth binary segmentation. As input, you have to provide a gray-scale image that represents the pixel affinities for belonging to the foreground. Via a single parameter you can adjust the smoothness of the segmentation.

has topic
Description

The Trainable Weka Segmentation is a Fiji plugin that combines a collection of machine learning algorithms with a set of selected image features to produce pixel-based segmentations. Weka (Waikato Environment for Knowledge Analysis) can itself be called from the plugin. It contains a collection of visualization tools and algorithms for data analysis and predictive modeling, together with graphical user interfaces for easy access to this functionality. As described on their wikipedia site, the advantages of Weka include: - freely availability under the GNU General Public License - portability, since it is fully implemented in the Java programming language and thus runs on almost any modern computing platform - a comprehensive collection of data preprocessing and modeling techniques - ease of use due to its graphical user interfaces - Weka supports several standard data mining tasks, more specifically, data preprocessing, clustering, classification, regression, visualization, and feature selection.

The main goal of this plugin is to work as a bridge between the Machine Learning and the Image Processing fields. It provides the framework to use and, more important, compare any available classifier to perform image segmentation based on pixel classification.

has topic
Description

This plugin (Icy Tool) allows the user to create and edit annotations. Annotations are blocks of text that the user can put anywhere in the sequence. Run the plugin to get the GUI with all the features. Once a note is added to a sequence, left click on it to edit this one. If you closed your GUI and you have some notes on your sequence, right click and select "edit" to display the GUI.

As of now, the annotations are saved when the sequence is closed, but you have to run the plugin at least once to be able to see all the annotations in the image.

has function
need a thumbnail
Description

EnhanceOrSuppressFeatures enhances or suppresses certain image features (such as speckles, ring shapes, and neurites), which can improve subsequent identification of objects.

need a thumbnail
Description

The plugin performs stitching of images of a tiled scan to reconstruct the image of the whole sample.

has topic