library

AIR Tools is a MATLAB software package for tomographic reconstruction (and other imaging problems) consisting of a number of algebraic iterative reconstruction methods.

Pandore is a standardized library of image processing operators. The current version contains image processing operators that operate on grayscale, color and multispectral, 1D, 2D and 3D images.

Link: Operator Index

A collection for tracking microtubule dynamics, written in Python.

An automated MATLAB tool for segmentation of surface stained cells

Matlab toolbox to analyze single molecule mRNA FISH data. Allows counting the number of mature and nascent transcripts in 3D images. See 2513. Following toolboxes are required: - Optimization toolbox - Statistics toolbox - Image processing toolbox - (Optional) Parallel processing toolbox

Input data type: 3D image

Output data type: CSV