Automated

Dedicated to score tracking dataset from the ISBI tracking challenge

An ImageJ plugin for evaluate intra-nuclear 3D cross-distances between fluorescent spots in multi-channel images 

ICY plugin,

the right click on sequences and ROIs will open a menu with various features, such as image and ROI copy, data conversion and extraction. See documentation for more information.

Converts an image with multiple color channels to one or more grayscale images.

The aim of this plugin is to characterise the orientation and isotropy properties of a region of interest (ROI) in an image, based on the evaluation of the gradient structure tensor in a local neighborhood. 

Plots a histogram of the desired measurement.

Drag, rotate & zoom in your image using two-finger gestures (in 2D and 3D).

For post-processing analysis, use Analyze Skeleton plugin written by the same author.

Grab random images from Flickr :

• in recent uploads
• in interestingness stream
• from tags search

TrakEM2 is an ImageJ plugin for morphological data mining, three-dimensional modeling and image stitching, registration, editing and annotation (Fiji comes with TrakEM2). It supports arbitrary-sized datasets. 

This plugin simulates color blindness. 
It is based on http://quarkphysics.ca/phys1/light/u-light.htm