Workflow

A workflow is a set of components assembled in some specific order to

  1. Measure and estimate some numerical parameters of the biological system or
  2. Visualization

for addressing a biological question. Workflows can be a combination of components from the same or different software packages using several scripts and manual steps.

Cell segmentation by EBImage, R

Workflow
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Cell segmentation and measurements

Workflow
Description
Human HT29 cells are fairly smooth and elliptical. This CellProfiler workflow demonstrates how to accurately identify these cells and how to measurements cellular parameters such as morphology, count, intensity and texture.
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High-Content Screening (KNIME)

Workflow
has topic
High content screening
has function
Analysis
Image segmentation
Object feature extraction
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Feature Calculation (KNIME)

Workflow
has topic
Bioimage informatics
has function
Image feature detection
Image segmentation
Object feature extraction
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Projector (KNIME)

Workflow
has topic
Bioimage informatics
has function
Image projection
Image visualisation
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