Component

A Component is an implementation of certain image processing / analysis algorithms.

Each component alone does not solve a Bioimage Analysis problem.

These problems can be addressed by combining such components into workflows.

Description

mahotas.convolve(f, weights, mode='reflect', cval=0.0, out={new array})

Convolution of f and weights

Convolution is performed in doubles to avoid over/underflow, but the result is then cast to f.dtype. This conversion may result in over/underflow when using small integer types or unsigned types (if the output is negative). Converting to a floating point representation avoids this issue:

c = convolve(f.astype(float), kernel)
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Description

This plugin can be used for inferring spatial interactions between patterns of spot-like objects in images or between coordinates read from a file. 

Description

This plugin can be used to add synthetic Poisson-distributed noise to an image in order to simulate shot noise of various signal-to-noise ratios. It can be used to generate benchmark images in order to assess the accuracy and robustness of image processing algorithms as a function of the noise level present in images.

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