CLIJ2 is a GPU-accelerated image processing library for ImageJ/Fiji, Icy, Matlab and Java. It comes with hundreds of operations for filtering, binarizing, labeling, measuring in images, projections, transformations and mathematical operations for images. While most of these are classical image processing operations, CLIJ2 also allows performing operations on matrices potentially representing neighborhood relationships between cells and pixels.
CLIJ2 was developed to process images from fluorescence microscopy data of developing cells, tissues, organoids and organisms.
Using a text file containing 3D point coordinates as reference pairs, 3D image stack is transformed.
