Java

View your multi-channel data as a montage with one image per channel plus a merged, color channel (useful to create figures for communication). 

This viewer plugin will split all N channels of the active sequence into a montage of N+1 images, with one image for each channel, plus an additionnal color (merge) rendering.

Image segmentation by representative colors selection. Two versions are available :

• thresholding
• positive and negative colors selection and SVM learning

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Coloc 2 is Fiji's plugin for colocalization analysis. It implements and performs the pixel intensity correlation over space methods of Pearson, Manders, Costes, Li and more, for scatterplots, analysis, automatic thresholding and statistical significance testing.

Coloc 2 does NOT perform object based colocalization measurements, where objects are first segmented from the image, then their spatial relationships like overlap etc. are measured. This complementary approach is implemented in many ways elsewhere.

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Saves a RGB image (typically a screenshot) into a CMYK TIFF (required by publishers for high-fidelity color printing).

Wavelet Spot Detector for Blocks, to integrate in Icy protocols.